miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26814 3' -68.1 NC_005809.1 + 30985 0.66 0.154676
Target:  5'- cGGCGGCCa-GCCGGCgGCC-CUGg-- -3'
miRNA:   3'- cCCGCCGGgcCGGCCG-CGGcGGCauc -5'
26814 3' -68.1 NC_005809.1 + 30728 0.66 0.158677
Target:  5'- gGGGUucGCCCaGGCCaaccgcGGCGCgGCCGg-- -3'
miRNA:   3'- -CCCGc-CGGG-CCGG------CCGCGgCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 30547 0.68 0.107557
Target:  5'- uGGGCaagaccucgccGGCCaCGGCC-GCGCUGCUGg-- -3'
miRNA:   3'- -CCCG-----------CCGG-GCCGGcCGCGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 29133 0.67 0.143216
Target:  5'- aGGCcGCCaaGCUGGCGggcCUGCCGUGGg -3'
miRNA:   3'- cCCGcCGGgcCGGCCGC---GGCGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 29088 0.66 0.16696
Target:  5'- cGGGCgccgaggucaGGCCCGuGCgGGacuuGCUGCCGg-- -3'
miRNA:   3'- -CCCG----------CCGGGC-CGgCCg---CGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 28672 0.66 0.158677
Target:  5'- cGGCGGCCUcGCCaGCGCgGCgCGc-- -3'
miRNA:   3'- cCCGCCGGGcCGGcCGCGgCG-GCauc -5'
26814 3' -68.1 NC_005809.1 + 28243 0.66 0.175628
Target:  5'- -aGCaGGCCCGGCaguucagccaaGGCGCgCGCCa--- -3'
miRNA:   3'- ccCG-CCGGGCCGg----------CCGCG-GCGGcauc -5'
26814 3' -68.1 NC_005809.1 + 27839 0.75 0.03112
Target:  5'- cGGUGGCgCCGGCC-GCGCCGCUGc-- -3'
miRNA:   3'- cCCGCCG-GGCCGGcCGCGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 27692 0.66 0.171245
Target:  5'- uGGaauacaGGCCgCGcGCCGGCagcggcucGCCGCCGg-- -3'
miRNA:   3'- cCCg-----CCGG-GC-CGGCCG--------CGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 27503 0.72 0.053679
Target:  5'- cGGCGGCCuCGGCCgccagcuucucGGCGCgGUCGg-- -3'
miRNA:   3'- cCCGCCGG-GCCGG-----------CCGCGgCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 27441 0.67 0.139212
Target:  5'- cGGCGGCCgcaGGCCcuGGCGCugguaugccagcgCGCCGc-- -3'
miRNA:   3'- cCCGCCGGg--CCGG--CCGCG-------------GCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 25801 0.67 0.127147
Target:  5'- cGGCGcGCUCGGuaucguugaucugcaCCGG-GCCGCCGUu- -3'
miRNA:   3'- cCCGC-CGGGCC---------------GGCCgCGGCGGCAuc -5'
26814 3' -68.1 NC_005809.1 + 25630 0.66 0.162771
Target:  5'- cGGCGGCaCGcuGCUGGaCGgCGCCGUGc -3'
miRNA:   3'- cCCGCCGgGC--CGGCC-GCgGCGGCAUc -5'
26814 3' -68.1 NC_005809.1 + 25507 0.68 0.116056
Target:  5'- aGGGUcaGGCCCgcgaugaGGUCGGUuuuGCCGCCGc-- -3'
miRNA:   3'- -CCCG--CCGGG-------CCGGCCG---CGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 25308 0.66 0.158677
Target:  5'- cGGcCGGCCCuGCCaccGGCGCucguCGCCGg-- -3'
miRNA:   3'- cCC-GCCGGGcCGG---CCGCG----GCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 24575 0.69 0.09679
Target:  5'- aGGcCGGCCaCGGUCGG-GCCGuCCGgcGu -3'
miRNA:   3'- cCC-GCCGG-GCCGGCCgCGGC-GGCauC- -5'
26814 3' -68.1 NC_005809.1 + 24302 0.71 0.070294
Target:  5'- gGGGCGGUgaGGUCGGCGagcaGCCGcGGg -3'
miRNA:   3'- -CCCGCCGggCCGGCCGCgg--CGGCaUC- -5'
26814 3' -68.1 NC_005809.1 + 24098 0.71 0.070294
Target:  5'- cGGUGGacgaaUCGGCCGaCGCCGCCGgcGc -3'
miRNA:   3'- cCCGCCg----GGCCGGCcGCGGCGGCauC- -5'
26814 3' -68.1 NC_005809.1 + 23739 0.67 0.146947
Target:  5'- cGGUGGCgCGcagcagcgccauGCCGGCGCCaCCGg-- -3'
miRNA:   3'- cCCGCCGgGC------------CGGCCGCGGcGGCauc -5'
26814 3' -68.1 NC_005809.1 + 22490 0.66 0.16696
Target:  5'- gGGGCgGGCUgGGCUGGUcauGCCcGCCa--- -3'
miRNA:   3'- -CCCG-CCGGgCCGGCCG---CGG-CGGcauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.