Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26814 | 3' | -68.1 | NC_005809.1 | + | 42416 | 0.69 | 0.094012 |
Target: 5'- gGGGCGcauccGCCUGcggggaaGCCuGGCGCCacGCCGUAGc -3' miRNA: 3'- -CCCGC-----CGGGC-------CGG-CCGCGG--CGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 41887 | 1.09 | 0.000049 |
Target: 5'- uGGGCGGCCCGGCCGGCGCCGCCGUAGg -3' miRNA: 3'- -CCCGCCGGGCCGGCCGCGGCGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 41765 | 0.67 | 0.136013 |
Target: 5'- cGGCaagGGCUgGGCgCGGCGCguCGCCGg-- -3' miRNA: 3'- cCCG---CCGGgCCG-GCCGCG--GCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 41602 | 0.73 | 0.043196 |
Target: 5'- aGGCGGCCaaguGGCUGcaaGCUGCCGUGGg -3' miRNA: 3'- cCCGCCGGg---CCGGCcg-CGGCGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 41296 | 0.7 | 0.082533 |
Target: 5'- uGGGUcgagGGCCgGGaauaCCGGCGCuCGCCGg-- -3' miRNA: 3'- -CCCG----CCGGgCC----GGCCGCG-GCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 40548 | 0.68 | 0.122598 |
Target: 5'- aGGCGGCCgGuauGCCGGUGCUGgUGgcGu -3' miRNA: 3'- cCCGCCGGgC---CGGCCGCGGCgGCauC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 40435 | 0.66 | 0.16696 |
Target: 5'- cGGCGGCgCGGuugaCCGGCuGCUGCaCGa-- -3' miRNA: 3'- cCCGCCGgGCC----GGCCG-CGGCG-GCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 40135 | 0.67 | 0.132538 |
Target: 5'- -cGUGGCgCCgaucuucgaGGCCGGCcuGCUGCCGUAc -3' miRNA: 3'- ccCGCCG-GG---------CCGGCCG--CGGCGGCAUc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 38994 | 0.66 | 0.162771 |
Target: 5'- uGGCGGCCgCGGaUCGGUGUaCGCCc--- -3' miRNA: 3'- cCCGCCGG-GCC-GGCCGCG-GCGGcauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 37056 | 0.66 | 0.161533 |
Target: 5'- uGGGCGG-CCGGCguguccuacgacuuUGGCaGCauCGCCGUAc -3' miRNA: 3'- -CCCGCCgGGCCG--------------GCCG-CG--GCGGCAUc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 37003 | 0.72 | 0.050847 |
Target: 5'- uGGCGGCCaGcGuuGGCGCCGUCGa-- -3' miRNA: 3'- cCCGCCGGgC-CggCCGCGGCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 36172 | 0.7 | 0.084761 |
Target: 5'- uGGGCcgcgacuacaccGGgCCGGCCGGCcugcgccugauuGCCGaCGUGGg -3' miRNA: 3'- -CCCG------------CCgGGCCGGCCG------------CGGCgGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 35332 | 0.7 | 0.073572 |
Target: 5'- uGGGCGGCCgacaucgccgagggUGaGCgCGGCGCagaugcuGCCGUGGa -3' miRNA: 3'- -CCCGCCGG--------------GC-CG-GCCGCGg------CGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 33355 | 0.67 | 0.136013 |
Target: 5'- cGGGCGcGCCgcagaacgUGcGCC-GCGCCGCCGa-- -3' miRNA: 3'- -CCCGC-CGG--------GC-CGGcCGCGGCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 33186 | 0.66 | 0.154676 |
Target: 5'- uGGGCGcCCuCGGCaCGGCcaCCGCUGgcGa -3' miRNA: 3'- -CCCGCcGG-GCCG-GCCGc-GGCGGCauC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 32913 | 0.66 | 0.175628 |
Target: 5'- -uGCGGCCaCGGCCuGCacgGCUGCUGUu- -3' miRNA: 3'- ccCGCCGG-GCCGGcCG---CGGCGGCAuc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 32090 | 0.67 | 0.136013 |
Target: 5'- --aCGGCCCguucgGGCCGGUGCUGCgCGa-- -3' miRNA: 3'- cccGCCGGG-----CCGGCCGCGGCG-GCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 31877 | 0.67 | 0.146947 |
Target: 5'- --uCGGCCgaGGCCGugcGCGCUGCCGUcaAGa -3' miRNA: 3'- cccGCCGGg-CCGGC---CGCGGCGGCA--UC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 31315 | 0.67 | 0.129145 |
Target: 5'- uGGUGGCCCGGCUGGaaucccagGUCGCgGc-- -3' miRNA: 3'- cCCGCCGGGCCGGCCg-------CGGCGgCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 31047 | 0.67 | 0.12881 |
Target: 5'- cGGGCcaacgugcgcgaaGGCCCgaacaucaggGGCCuGGUGCCGCUGc-- -3' miRNA: 3'- -CCCG-------------CCGGG----------CCGG-CCGCGGCGGCauc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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