Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26814 | 3' | -68.1 | NC_005809.1 | + | 30547 | 0.68 | 0.107557 |
Target: 5'- uGGGCaagaccucgccGGCCaCGGCC-GCGCUGCUGg-- -3' miRNA: 3'- -CCCG-----------CCGG-GCCGGcCGCGGCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 36172 | 0.7 | 0.084761 |
Target: 5'- uGGGCcgcgacuacaccGGgCCGGCCGGCcugcgccugauuGCCGaCGUGGg -3' miRNA: 3'- -CCCG------------CCgGGCCGGCCG------------CGGCgGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 25630 | 0.66 | 0.162771 |
Target: 5'- cGGCGGCaCGcuGCUGGaCGgCGCCGUGc -3' miRNA: 3'- cCCGCCGgGC--CGGCC-GCgGCGGCAUc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 14869 | 0.67 | 0.143216 |
Target: 5'- cGGCGGCgagCCGcuGCCGGCGCgCgGCCuGUAu -3' miRNA: 3'- cCCGCCG---GGC--CGGCCGCG-G-CGG-CAUc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 40135 | 0.67 | 0.132538 |
Target: 5'- -cGUGGCgCCgaucuucgaGGCCGGCcuGCUGCCGUAc -3' miRNA: 3'- ccCGCCG-GG---------CCGGCCG--CGGCGGCAUc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 10206 | 0.7 | 0.08036 |
Target: 5'- uGGGCGGCCgGGgccUCGGCGgCGaCCGcAGc -3' miRNA: 3'- -CCCGCCGGgCC---GGCCGCgGC-GGCaUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 29133 | 0.67 | 0.143216 |
Target: 5'- aGGCcGCCaaGCUGGCGggcCUGCCGUGGg -3' miRNA: 3'- cCCGcCGGgcCGGCCGC---GGCGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 35332 | 0.7 | 0.073572 |
Target: 5'- uGGGCGGCCgacaucgccgagggUGaGCgCGGCGCagaugcuGCCGUGGa -3' miRNA: 3'- -CCCGCCGG--------------GC-CG-GCCGCGg------CGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 1752 | 0.71 | 0.072205 |
Target: 5'- cGGGCGGUcauggCCGGCCuGCGCCuggcgcgucggGCCGa-- -3' miRNA: 3'- -CCCGCCG-----GGCCGGcCGCGG-----------CGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 32090 | 0.67 | 0.136013 |
Target: 5'- --aCGGCCCguucgGGCCGGUGCUGCgCGa-- -3' miRNA: 3'- cccGCCGGG-----CCGGCCGCGGCG-GCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 40435 | 0.66 | 0.16696 |
Target: 5'- cGGCGGCgCGGuugaCCGGCuGCUGCaCGa-- -3' miRNA: 3'- cCCGCCGgGCC----GGCCG-CGGCG-GCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 1870 | 0.68 | 0.119441 |
Target: 5'- aGGUucaGCCCguGGCCGGCGCUgGCCGg-- -3' miRNA: 3'- cCCGc--CGGG--CCGGCCGCGG-CGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 20817 | 0.67 | 0.137427 |
Target: 5'- cGGGCGGCCuguccuauguggacgCGGCC-GCGCCcaaCgGUGGc -3' miRNA: 3'- -CCCGCCGG---------------GCCGGcCGCGGc--GgCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 31877 | 0.67 | 0.146947 |
Target: 5'- --uCGGCCgaGGCCGugcGCGCUGCCGUcaAGa -3' miRNA: 3'- cccGCCGGg-CCGGC---CGCGGCGGCA--UC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 30728 | 0.66 | 0.158677 |
Target: 5'- gGGGUucGCCCaGGCCaaccgcGGCGCgGCCGg-- -3' miRNA: 3'- -CCCGc-CGGG-CCGG------CCGCGgCGGCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 16947 | 0.69 | 0.099382 |
Target: 5'- aGGUGGacgcgcugCUGGCgCcGCGCCGCCGUGGu -3' miRNA: 3'- cCCGCCg-------GGCCG-GcCGCGGCGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 16760 | 0.69 | 0.092775 |
Target: 5'- cGGCGGCCCGGugcagaucaacgauaCCGagcGCGCCGCgCGc-- -3' miRNA: 3'- cCCGCCGGGCC---------------GGC---CGCGGCG-GCauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 19872 | 0.68 | 0.122598 |
Target: 5'- cGGGCGuGCCgaaGGCguCGcGCGCCuucuugGCCGUGGc -3' miRNA: 3'- -CCCGC-CGGg--CCG--GC-CGCGG------CGGCAUC- -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 22490 | 0.66 | 0.16696 |
Target: 5'- gGGGCgGGCUgGGCUGGUcauGCCcGCCa--- -3' miRNA: 3'- -CCCG-CCGGgCCGGCCG---CGG-CGGcauc -5' |
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26814 | 3' | -68.1 | NC_005809.1 | + | 28672 | 0.66 | 0.158677 |
Target: 5'- cGGCGGCCUcGCCaGCGCgGCgCGc-- -3' miRNA: 3'- cCCGCCGGGcCGGcCGCGgCG-GCauc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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