Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26815 | 5' | -58.2 | NC_005809.1 | + | 41734 | 1.08 | 0.000406 |
Target: 5'- uCUACACCAACCUGCCCACCUGGCCGAc -3' miRNA: 3'- -GAUGUGGUUGGACGGGUGGACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 19385 | 0.7 | 0.281656 |
Target: 5'- -gAgGCCGACCUGCUgcugucgCACCagcagggGGCCGAa -3' miRNA: 3'- gaUgUGGUUGGACGG-------GUGGa------CCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 19313 | 0.69 | 0.311397 |
Target: 5'- -gACACCGACCUGaccaugcuguucCCCAgCgaggcgcggucggUGGCCGAg -3' miRNA: 3'- gaUGUGGUUGGAC------------GGGUgG-------------ACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 12903 | 0.66 | 0.484495 |
Target: 5'- -aACACaCGGCCgcGCCCugCUGGgCa- -3' miRNA: 3'- gaUGUG-GUUGGa-CGGGugGACCgGcu -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 36181 | 0.74 | 0.148903 |
Target: 5'- aCUACACCgGGCCgGCCgGCCUGcGCCuGAu -3' miRNA: 3'- -GAUGUGG-UUGGaCGGgUGGAC-CGG-CU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 23086 | 0.74 | 0.153082 |
Target: 5'- -cGCAgCGGCCUGCCCACC-GGCa-- -3' miRNA: 3'- gaUGUgGUUGGACGGGUGGaCCGgcu -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 31284 | 0.73 | 0.16176 |
Target: 5'- ---aACCGuuuuCC-GCCUACCUGGCCGAg -3' miRNA: 3'- gaugUGGUu---GGaCGGGUGGACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 15134 | 0.71 | 0.212076 |
Target: 5'- -aGCGCCAggGCCUGCggCCGCCgGGCgCGGu -3' miRNA: 3'- gaUGUGGU--UGGACG--GGUGGaCCG-GCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 24701 | 0.71 | 0.223632 |
Target: 5'- uCUGCAauCUGGCCcugGCCUACCUGGgCGAc -3' miRNA: 3'- -GAUGU--GGUUGGa--CGGGUGGACCgGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 39982 | 0.7 | 0.275283 |
Target: 5'- cCU-CGCCAACCUGCUgGCCUugcaaGCUGAa -3' miRNA: 3'- -GAuGUGGUUGGACGGgUGGAc----CGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 988 | 0.71 | 0.241966 |
Target: 5'- cCUuCACCGucGCCcgcUGCCCGCgccaCUGGCCGGg -3' miRNA: 3'- -GAuGUGGU--UGG---ACGGGUG----GACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 33258 | 0.71 | 0.212076 |
Target: 5'- -cGCGCCGACgUGCgCCGCCaGGUCGc -3' miRNA: 3'- gaUGUGGUUGgACG-GGUGGaCCGGCu -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 21960 | 0.79 | 0.061501 |
Target: 5'- -gACACCGACCUGCgacgCCGCCUGG-CGAa -3' miRNA: 3'- gaUGUGGUUGGACG----GGUGGACCgGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 29390 | 0.7 | 0.254872 |
Target: 5'- -aACGCCGGCCaagggcGCCCAgCgcGGCCGAc -3' miRNA: 3'- gaUGUGGUUGGa-----CGGGUgGa-CCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 38834 | 0.75 | 0.115737 |
Target: 5'- -gGCACCGACgUGCCCACCaccGGCgUGAa -3' miRNA: 3'- gaUGUGGUUGgACGGGUGGa--CCG-GCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 30556 | 0.71 | 0.212076 |
Target: 5'- cCU-CGCCGGCCacgGCCgcgCugCUGGCCGAc -3' miRNA: 3'- -GAuGUGGUUGGa--CGG---GugGACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 31581 | 0.7 | 0.268338 |
Target: 5'- aUACGCuCAugCaauCCgGCCUGGCCGAa -3' miRNA: 3'- gAUGUG-GUugGac-GGgUGGACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 13999 | 0.69 | 0.304503 |
Target: 5'- gCUGCcggugGCCGACgUGCgCGCCgcgaUGGCCGGc -3' miRNA: 3'- -GAUG-----UGGUUGgACGgGUGG----ACCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 24282 | 0.74 | 0.133209 |
Target: 5'- uUACACCGucgccACCgGCCCGCUgacGGCCGGc -3' miRNA: 3'- gAUGUGGU-----UGGaCGGGUGGa--CCGGCU- -5' |
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26815 | 5' | -58.2 | NC_005809.1 | + | 29783 | 0.73 | 0.157367 |
Target: 5'- -cGCACCAGCCUGUCUGa--GGCCGAc -3' miRNA: 3'- gaUGUGGUUGGACGGGUggaCCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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