miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26820 3' -58 NC_005809.1 + 1396 0.69 0.323525
Target:  5'- cACGGCUUCcucgcgcuuGUCGGCCUGgUGGCCg-- -3'
miRNA:   3'- -UGCUGGAG---------CGGUUGGACgACCGGaac -5'
26820 3' -58 NC_005809.1 + 36961 0.67 0.401378
Target:  5'- cAUGAUuagcugCUUGCCGGCCuUGUccuUGGCCUUGu -3'
miRNA:   3'- -UGCUG------GAGCGGUUGG-ACG---ACCGGAAC- -5'
26820 3' -58 NC_005809.1 + 1779 0.66 0.469588
Target:  5'- gACGcCCUCGCCGGCaC-GCcGGCCc-- -3'
miRNA:   3'- -UGCuGGAGCGGUUG-GaCGaCCGGaac -5'
26820 3' -58 NC_005809.1 + 24623 0.68 0.339811
Target:  5'- cCGGCCUCGCCAucGCCgcGCUGcGCg--- -3'
miRNA:   3'- uGCUGGAGCGGU--UGGa-CGAC-CGgaac -5'
26820 3' -58 NC_005809.1 + 32989 0.67 0.383076
Target:  5'- cUGGCCgaacaGCCAGCCgUGCaGGCCgUGg -3'
miRNA:   3'- uGCUGGag---CGGUUGG-ACGaCCGGaAC- -5'
26820 3' -58 NC_005809.1 + 35894 0.67 0.414516
Target:  5'- uCGGCCUuggCGCCccacuuuuccuuggcGACCUGCucgaUGGCCUg- -3'
miRNA:   3'- uGCUGGA---GCGG---------------UUGGACG----ACCGGAac -5'
26820 3' -58 NC_005809.1 + 27662 0.7 0.285384
Target:  5'- gACGACCaCGCCAucuggcgccGCCUGCUG-CCg-- -3'
miRNA:   3'- -UGCUGGaGCGGU---------UGGACGACcGGaac -5'
26820 3' -58 NC_005809.1 + 531 0.68 0.365337
Target:  5'- cCGACCgcgacagCGCCcGCaaGCUGGCCg-- -3'
miRNA:   3'- uGCUGGa------GCGGuUGgaCGACCGGaac -5'
26820 3' -58 NC_005809.1 + 28547 0.66 0.469588
Target:  5'- cACGACCUUG-CGGCC-GCcGGCCa-- -3'
miRNA:   3'- -UGCUGGAGCgGUUGGaCGaCCGGaac -5'
26820 3' -58 NC_005809.1 + 35068 0.72 0.197505
Target:  5'- aACGccauCCUCGgCAACCUGCUGGgCg-- -3'
miRNA:   3'- -UGCu---GGAGCgGUUGGACGACCgGaac -5'
26820 3' -58 NC_005809.1 + 731 0.69 0.307827
Target:  5'- gGCGGCUUUGCCGACaacGCcGGCCa-- -3'
miRNA:   3'- -UGCUGGAGCGGUUGga-CGaCCGGaac -5'
26820 3' -58 NC_005809.1 + 34337 0.7 0.285384
Target:  5'- aGCGACUUCGCCGACgaggGCacGGCCg-- -3'
miRNA:   3'- -UGCUGGAGCGGUUGga--CGa-CCGGaac -5'
26820 3' -58 NC_005809.1 + 38482 0.66 0.4396
Target:  5'- aGCGccgcccACCUgGCCGGCCUGaUGGCUa-- -3'
miRNA:   3'- -UGC------UGGAgCGGUUGGACgACCGGaac -5'
26820 3' -58 NC_005809.1 + 10917 0.71 0.225817
Target:  5'- gGCGACCUgccCGCCggUUUGCagGGCCUc- -3'
miRNA:   3'- -UGCUGGA---GCGGuuGGACGa-CCGGAac -5'
26820 3' -58 NC_005809.1 + 5570 0.66 0.449477
Target:  5'- uCGACggCGCCAAC--GCUGGCCg-- -3'
miRNA:   3'- uGCUGgaGCGGUUGgaCGACCGGaac -5'
26820 3' -58 NC_005809.1 + 37314 0.66 0.449477
Target:  5'- aACGACgcaUUGCCGaccccgACCUGCcGGCCg-- -3'
miRNA:   3'- -UGCUGg--AGCGGU------UGGACGaCCGGaac -5'
26820 3' -58 NC_005809.1 + 13443 0.66 0.469588
Target:  5'- -aGGCC-CGCCAGCUUGgC-GGCCUc- -3'
miRNA:   3'- ugCUGGaGCGGUUGGAC-GaCCGGAac -5'
26820 3' -58 NC_005809.1 + 4382 0.71 0.219892
Target:  5'- gGCGACg--GCCGACUUGUcGGCCUUGa -3'
miRNA:   3'- -UGCUGgagCGGUUGGACGaCCGGAAC- -5'
26820 3' -58 NC_005809.1 + 34610 0.66 0.469588
Target:  5'- gACGAacucauCgUUGCCGACCUGaaauaUGGCCgUGg -3'
miRNA:   3'- -UGCU------GgAGCGGUUGGACg----ACCGGaAC- -5'
26820 3' -58 NC_005809.1 + 20313 0.7 0.285384
Target:  5'- gGCGGCCggUUGCgAugCggGCUGGCCUUc -3'
miRNA:   3'- -UGCUGG--AGCGgUugGa-CGACCGGAAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.