miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 42158 0.72 0.214912
Target:  5'- ---gUACGGCCGACgaucaccgccgugcuGCUGGUGGgCGCc -3'
miRNA:   3'- uuauGUGCCGGUUG---------------UGACCGCCgGCG- -5'
26822 3' -57 NC_005809.1 + 2739 0.72 0.21841
Target:  5'- --aGCGCGGcCCGGCGCUgcucgGGCGuGCCGa -3'
miRNA:   3'- uuaUGUGCC-GGUUGUGA-----CCGC-CGGCg -5'
26822 3' -57 NC_005809.1 + 7490 0.72 0.21841
Target:  5'- uGGUAUA-GGCCccuuGCaACUGGCGGCgCGCg -3'
miRNA:   3'- -UUAUGUgCCGGu---UG-UGACCGCCG-GCG- -5'
26822 3' -57 NC_005809.1 + 27421 0.72 0.21841
Target:  5'- --cGCGCcuGGCgCAccGCGCccGGCGGCCGCa -3'
miRNA:   3'- uuaUGUG--CCG-GU--UGUGa-CCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 15111 0.72 0.223748
Target:  5'- cGUGCGCGGC--GCGCUGGCauaccagcgccagGGCCuGCg -3'
miRNA:   3'- uUAUGUGCCGguUGUGACCG-------------CCGG-CG- -5'
26822 3' -57 NC_005809.1 + 30431 0.72 0.224348
Target:  5'- -cUACGCGGaagcgCAGCGCgUGGCGcGUCGCg -3'
miRNA:   3'- uuAUGUGCCg----GUUGUG-ACCGC-CGGCG- -5'
26822 3' -57 NC_005809.1 + 34355 0.72 0.236635
Target:  5'- --gGCACGGCCGcGCACgaacUGGCCGCc -3'
miRNA:   3'- uuaUGUGCCGGU-UGUGacc-GCCGGCG- -5'
26822 3' -57 NC_005809.1 + 5138 0.71 0.242987
Target:  5'- -cUGCaACGuGCC-GCGCaGGCGGCCGUc -3'
miRNA:   3'- uuAUG-UGC-CGGuUGUGaCCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 15061 0.71 0.242987
Target:  5'- --gAC-CGcGCCGAgaaGCUGGCGGCCGa -3'
miRNA:   3'- uuaUGuGC-CGGUUg--UGACCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 37004 0.71 0.242987
Target:  5'- ----gGCGGCCAGCGUUGGC-GCCGUc -3'
miRNA:   3'- uuaugUGCCGGUUGUGACCGcCGGCG- -5'
26822 3' -57 NC_005809.1 + 9326 0.71 0.256117
Target:  5'- --cGCAC-GUCGGCGCggcgGGCGGCgGCa -3'
miRNA:   3'- uuaUGUGcCGGUUGUGa---CCGCCGgCG- -5'
26822 3' -57 NC_005809.1 + 3574 0.71 0.262898
Target:  5'- --gGCugGGCguACACcgauccGCGGCCGCc -3'
miRNA:   3'- uuaUGugCCGguUGUGac----CGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 8123 0.71 0.262898
Target:  5'- --cGCGCGGCCGGCGUUGGUugugGGCgUGCg -3'
miRNA:   3'- uuaUGUGCCGGUUGUGACCG----CCG-GCG- -5'
26822 3' -57 NC_005809.1 + 27828 0.7 0.284113
Target:  5'- --cGCGCuGCCcGCGgUGGCgccGGCCGCg -3'
miRNA:   3'- uuaUGUGcCGGuUGUgACCG---CCGGCG- -5'
26822 3' -57 NC_005809.1 + 23521 0.7 0.29148
Target:  5'- --gACACGcugaUCGACGCcgccGGCGGCCGCu -3'
miRNA:   3'- uuaUGUGCc---GGUUGUGa---CCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 38122 0.7 0.29148
Target:  5'- uGUGCAUGacgguGCCAcCGCUGGCGGCuucccccuggCGCg -3'
miRNA:   3'- uUAUGUGC-----CGGUuGUGACCGCCG----------GCG- -5'
26822 3' -57 NC_005809.1 + 2570 0.7 0.29148
Target:  5'- --gACACGGcCCAGCGCgUGcGCGcgcuuGCCGCc -3'
miRNA:   3'- uuaUGUGCC-GGUUGUG-AC-CGC-----CGGCG- -5'
26822 3' -57 NC_005809.1 + 33886 0.7 0.298995
Target:  5'- -cUGCGCGGCgcACACcugGGCGGCgcaGCa -3'
miRNA:   3'- uuAUGUGCCGguUGUGa--CCGCCGg--CG- -5'
26822 3' -57 NC_005809.1 + 2388 0.7 0.298995
Target:  5'- --cGCACGGCa-----UGGCGGUCGCu -3'
miRNA:   3'- uuaUGUGCCGguugugACCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 31588 0.7 0.298995
Target:  5'- cAUGCAaucCGGCCuggccgaACaGGUGGCCGCa -3'
miRNA:   3'- uUAUGU---GCCGGuug----UGaCCGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.