miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26824 3' -56.4 NC_005809.1 + 34054 0.66 0.621114
Target:  5'- -gACACgaCGGUCACGGCGacCGUggGGa -3'
miRNA:   3'- gaUGUGgaGCUGGUGCCGC--GCGuuCC- -5'
26824 3' -56.4 NC_005809.1 + 32932 0.67 0.544683
Target:  5'- gCUGCugUUCGGCCAgGGCGaC-CAcGGc -3'
miRNA:   3'- -GAUGugGAGCUGGUgCCGC-GcGUuCC- -5'
26824 3' -56.4 NC_005809.1 + 32522 0.71 0.302864
Target:  5'- --cCACCUCGGCagUAgGGgGCGUAGGGg -3'
miRNA:   3'- gauGUGGAGCUG--GUgCCgCGCGUUCC- -5'
26824 3' -56.4 NC_005809.1 + 31500 0.69 0.413023
Target:  5'- -cAUACCUUG-CCGcCGGCGUGCugcuGGGc -3'
miRNA:   3'- gaUGUGGAGCuGGU-GCCGCGCGu---UCC- -5'
26824 3' -56.4 NC_005809.1 + 30610 0.67 0.567381
Target:  5'- -gGCAUCggcgaucuguucuugCGACCAgcCGGCGCGaauGAGGg -3'
miRNA:   3'- gaUGUGGa--------------GCUGGU--GCCGCGCg--UUCC- -5'
26824 3' -56.4 NC_005809.1 + 29759 0.68 0.451554
Target:  5'- ---gGCCUCGGCUgcugccagGCGcGUGCGCGAGa -3'
miRNA:   3'- gaugUGGAGCUGG--------UGC-CGCGCGUUCc -5'
26824 3' -56.4 NC_005809.1 + 29674 0.68 0.499215
Target:  5'- -aGCGCC-CGGCCugGacaacuggcaaaccGCGCGCcuGGg -3'
miRNA:   3'- gaUGUGGaGCUGGugC--------------CGCGCGuuCC- -5'
26824 3' -56.4 NC_005809.1 + 29618 0.67 0.527587
Target:  5'- -gAUACCcCGAgCACGGCGUGgguguccucugcggcCAGGGg -3'
miRNA:   3'- gaUGUGGaGCUgGUGCCGCGC---------------GUUCC- -5'
26824 3' -56.4 NC_005809.1 + 29382 0.69 0.441735
Target:  5'- -aGC-CCUCgGACU-CGGCGCGguAGGc -3'
miRNA:   3'- gaUGuGGAG-CUGGuGCCGCGCguUCC- -5'
26824 3' -56.4 NC_005809.1 + 29150 0.68 0.461491
Target:  5'- -cGgGCCU-GACCuCGGCGCcCGAGGa -3'
miRNA:   3'- gaUgUGGAgCUGGuGCCGCGcGUUCC- -5'
26824 3' -56.4 NC_005809.1 + 29117 0.68 0.471542
Target:  5'- uUGCugC-CGGUCAC-GCGCGCGAGGc -3'
miRNA:   3'- gAUGugGaGCUGGUGcCGCGCGUUCC- -5'
26824 3' -56.4 NC_005809.1 + 29030 0.66 0.620012
Target:  5'- -cGCGCUUCGGCCAggucgauacccacCGGCG-GCucguAGGc -3'
miRNA:   3'- gaUGUGGAGCUGGU-------------GCCGCgCGu---UCC- -5'
26824 3' -56.4 NC_005809.1 + 28884 0.71 0.334191
Target:  5'- -cGCaACC-CGACgACGGCGCGCu-GGc -3'
miRNA:   3'- gaUG-UGGaGCUGgUGCCGCGCGuuCC- -5'
26824 3' -56.4 NC_005809.1 + 28740 0.68 0.471542
Target:  5'- -aGCGCCUUGGCaucguccagCGCGGUGCGCuucucGGc -3'
miRNA:   3'- gaUGUGGAGCUG---------GUGCCGCGCGuu---CC- -5'
26824 3' -56.4 NC_005809.1 + 28673 0.68 0.481704
Target:  5'- -gGCgGCCUCG-CCagcGCGGCGCGCcacgucguucacAAGGu -3'
miRNA:   3'- gaUG-UGGAGCuGG---UGCCGCGCG------------UUCC- -5'
26824 3' -56.4 NC_005809.1 + 28621 0.71 0.302864
Target:  5'- -cGCGCCgcgaUGGCCgGCGGC-CGCAAGGu -3'
miRNA:   3'- gaUGUGGa---GCUGG-UGCCGcGCGUUCC- -5'
26824 3' -56.4 NC_005809.1 + 28554 0.68 0.461491
Target:  5'- uUGCgGCCgcCGGCCaucGCGGCGCGCAc-- -3'
miRNA:   3'- gAUG-UGGa-GCUGG---UGCCGCGCGUucc -5'
26824 3' -56.4 NC_005809.1 + 28347 0.67 0.508601
Target:  5'- uCUGCGCCgugucccagcgcgCGGUCAUGGUGCGCAAcauGGu -3'
miRNA:   3'- -GAUGUGGa------------GCUGGUGCCGCGCGUU---CC- -5'
26824 3' -56.4 NC_005809.1 + 28223 0.66 0.577185
Target:  5'- -cACGCCgaCGACCACGcGCgggucggacuGCGCcAGGc -3'
miRNA:   3'- gaUGUGGa-GCUGGUGC-CG----------CGCGuUCC- -5'
26824 3' -56.4 NC_005809.1 + 27889 0.69 0.422466
Target:  5'- -gGCGCC---ACCGCGggcagcGCGCGCGAGGa -3'
miRNA:   3'- gaUGUGGagcUGGUGC------CGCGCGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.