Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26830 | 5' | -53.1 | NC_005809.1 | + | 37231 | 1.1 | 0.001119 |
Target: 5'- cUGUCGCCAACGACAUCGACAGCGUGGu -3' miRNA: 3'- -ACAGCGGUUGCUGUAGCUGUCGCACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 19049 | 0.85 | 0.063512 |
Target: 5'- gGcCGCCGGCGGCGUCGAuCAGCGUGu -3' miRNA: 3'- aCaGCGGUUGCUGUAGCU-GUCGCACc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 36579 | 0.8 | 0.135349 |
Target: 5'- cGUCGCCAuuuugaGCGACGcaGACGGUGUGGa -3' miRNA: 3'- aCAGCGGU------UGCUGUagCUGUCGCACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 6297 | 0.8 | 0.139249 |
Target: 5'- gGUCGCCcACGACAUUGACGGCa--- -3' miRNA: 3'- aCAGCGGuUGCUGUAGCUGUCGcacc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 7592 | 0.78 | 0.18425 |
Target: 5'- aGUCGUCGGCGACgGUgGACAGCacGUGGu -3' miRNA: 3'- aCAGCGGUUGCUG-UAgCUGUCG--CACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 27739 | 0.78 | 0.19467 |
Target: 5'- gGcCGCCAACGGCAUCGACcugGGCGa-- -3' miRNA: 3'- aCaGCGGUUGCUGUAGCUG---UCGCacc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 34992 | 0.77 | 0.217062 |
Target: 5'- cGUCGCCGACGACuUCGugGaCGUGu -3' miRNA: 3'- aCAGCGGUUGCUGuAGCugUcGCACc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 30141 | 0.76 | 0.261528 |
Target: 5'- ---gGUCGGCGACAUCGACAGCGc-- -3' miRNA: 3'- acagCGGUUGCUGUAGCUGUCGCacc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 41275 | 0.76 | 0.268455 |
Target: 5'- cGUCGCCcugGGCG-CGGCGGUGUGGg -3' miRNA: 3'- aCAGCGGuugCUGUaGCUGUCGCACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 14981 | 0.76 | 0.275528 |
Target: 5'- gGUCGCCAgaAUGGCGUCGGCAuugGCGUu- -3' miRNA: 3'- aCAGCGGU--UGCUGUAGCUGU---CGCAcc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 11440 | 0.75 | 0.282021 |
Target: 5'- gGUCGCCGauaaggcGCGACAcCGGCAGCuuuucaGUGGc -3' miRNA: 3'- aCAGCGGU-------UGCUGUaGCUGUCG------CACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 38890 | 0.75 | 0.28275 |
Target: 5'- cGUCGCCGugGugGauUCGcACgaaGGCGUGGa -3' miRNA: 3'- aCAGCGGUugCugU--AGC-UG---UCGCACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 34061 | 0.75 | 0.305312 |
Target: 5'- -uUCGCCGGCGACAUCaagGGCAucGaCGUGGa -3' miRNA: 3'- acAGCGGUUGCUGUAG---CUGU--C-GCACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 16437 | 0.74 | 0.329229 |
Target: 5'- -aUCGCCGGCGGCGUUGAacaCGGCGUc- -3' miRNA: 3'- acAGCGGUUGCUGUAGCU---GUCGCAcc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 37262 | 0.74 | 0.329229 |
Target: 5'- cGUgGCCGGCGACcuggaaaauAUCGACGcCGUGGc -3' miRNA: 3'- aCAgCGGUUGCUG---------UAGCUGUcGCACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 19626 | 0.73 | 0.390274 |
Target: 5'- gGUCaugcggGCC-GCGACAUCGGcCAGCGUcGGg -3' miRNA: 3'- aCAG------CGGuUGCUGUAGCU-GUCGCA-CC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 19028 | 0.73 | 0.399579 |
Target: 5'- aUGUCgGCCGAgGcCAUCGACcGCGUGc -3' miRNA: 3'- -ACAG-CGGUUgCuGUAGCUGuCGCACc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 5553 | 0.73 | 0.408073 |
Target: 5'- gGUCGCCcgccACGGUAUCGACGGCGccaacgcUGGc -3' miRNA: 3'- aCAGCGGu---UGCUGUAGCUGUCGC-------ACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 38926 | 0.72 | 0.415717 |
Target: 5'- gGUUGCUuguggacgugggguAACGAguUCGGCGGCGUGa -3' miRNA: 3'- aCAGCGG--------------UUGCUguAGCUGUCGCACc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 23098 | 0.72 | 0.418607 |
Target: 5'- cGaCGCCAACGGCGgcgcccacggCGACAGCGg-- -3' miRNA: 3'- aCaGCGGUUGCUGUa---------GCUGUCGCacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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