miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26830 5' -53.1 NC_005809.1 + 35195 0.72 0.418607
Target:  5'- cGggCGUCAACGACGUgauucaCGACcuGGCGUGGc -3'
miRNA:   3'- aCa-GCGGUUGCUGUA------GCUG--UCGCACC- -5'
26830 5' -53.1 NC_005809.1 + 19470 0.72 0.438175
Target:  5'- cUGUCGCCGugGGCGccgcCGuuGGCGUcGGg -3'
miRNA:   3'- -ACAGCGGUugCUGUa---GCugUCGCA-CC- -5'
26830 5' -53.1 NC_005809.1 + 5351 0.72 0.448154
Target:  5'- aUGUCGUUGGCGACAgccaacaugcUCGACAgguGCGUGc -3'
miRNA:   3'- -ACAGCGGUUGCUGU----------AGCUGU---CGCACc -5'
26830 5' -53.1 NC_005809.1 + 33078 0.72 0.458257
Target:  5'- gGUCGCgCAGCGACG-CGGCGGCc--- -3'
miRNA:   3'- aCAGCG-GUUGCUGUaGCUGUCGcacc -5'
26830 5' -53.1 NC_005809.1 + 27291 0.71 0.47882
Target:  5'- cUGUCGCCGaaAUGGgG-CGACAGCG-GGc -3'
miRNA:   3'- -ACAGCGGU--UGCUgUaGCUGUCGCaCC- -5'
26830 5' -53.1 NC_005809.1 + 36158 0.71 0.499826
Target:  5'- aGgCGCCAACGACAUgGGCcGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUAgCUGuCGCacc -5'
26830 5' -53.1 NC_005809.1 + 35325 0.7 0.521231
Target:  5'- ---gGCCGGCGACAUCGGCccgcGCcaGUGGc -3'
miRNA:   3'- acagCGGUUGCUGUAGCUGu---CG--CACC- -5'
26830 5' -53.1 NC_005809.1 + 22072 0.7 0.53098
Target:  5'- gGUCGCgGucggcgcGCGGC-UCGAUGGCGUGa -3'
miRNA:   3'- aCAGCGgU-------UGCUGuAGCUGUCGCACc -5'
26830 5' -53.1 NC_005809.1 + 29961 0.7 0.542983
Target:  5'- uUGUCGUC-GCGGCGcaCGACGGCcUGGa -3'
miRNA:   3'- -ACAGCGGuUGCUGUa-GCUGUCGcACC- -5'
26830 5' -53.1 NC_005809.1 + 7511 0.7 0.54737
Target:  5'- gGUUGCCGaggAUGGCGuugucuaccgugcgcUCGGCGGCGUGc -3'
miRNA:   3'- aCAGCGGU---UGCUGU---------------AGCUGUCGCACc -5'
26830 5' -53.1 NC_005809.1 + 40421 0.7 0.553971
Target:  5'- -uUCGCCAACGuguaCGGCGGCGcGGu -3'
miRNA:   3'- acAGCGGUUGCuguaGCUGUCGCaCC- -5'
26830 5' -53.1 NC_005809.1 + 14346 0.7 0.553971
Target:  5'- aGUCcgacCCGcGCGugGUCGuCGGCGUGGc -3'
miRNA:   3'- aCAGc---GGU-UGCugUAGCuGUCGCACC- -5'
26830 5' -53.1 NC_005809.1 + 12028 0.7 0.553972
Target:  5'- cGUgGCCGGCGAgGUCuugccCAGCGUGu -3'
miRNA:   3'- aCAgCGGUUGCUgUAGcu---GUCGCACc -5'
26830 5' -53.1 NC_005809.1 + 37669 0.7 0.558386
Target:  5'- cGUCGCCGACcugucgaACAUCGAaggacgcaugauuGCGUGGc -3'
miRNA:   3'- aCAGCGGUUGc------UGUAGCUgu-----------CGCACC- -5'
26830 5' -53.1 NC_005809.1 + 40863 0.7 0.565025
Target:  5'- uUGUCGCCAcCGACA-CGAUGGaCGaauUGGu -3'
miRNA:   3'- -ACAGCGGUuGCUGUaGCUGUC-GC---ACC- -5'
26830 5' -53.1 NC_005809.1 + 28039 0.7 0.565025
Target:  5'- cGUCGCCGaagaacacgucgGCGACGgucugcUCGAaCAGCG-GGc -3'
miRNA:   3'- aCAGCGGU------------UGCUGU------AGCU-GUCGCaCC- -5'
26830 5' -53.1 NC_005809.1 + 23397 0.7 0.576136
Target:  5'- cGaCGCCGGCGGCAcgGGCAGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUagCUGUCGCacc -5'
26830 5' -53.1 NC_005809.1 + 28558 0.69 0.597372
Target:  5'- gGcCGCCGgccaucgcggcGCGcACGUCGgccaccgGCAGCGUGGu -3'
miRNA:   3'- aCaGCGGU-----------UGC-UGUAGC-------UGUCGCACC- -5'
26830 5' -53.1 NC_005809.1 + 19215 0.69 0.598492
Target:  5'- --aCGCCAcCGuguuCAUCGGCGGCGaGGc -3'
miRNA:   3'- acaGCGGUuGCu---GUAGCUGUCGCaCC- -5'
26830 5' -53.1 NC_005809.1 + 9847 0.69 0.598493
Target:  5'- -cUCGgUuuCGGCGUCGAUgAGCGUGGc -3'
miRNA:   3'- acAGCgGuuGCUGUAGCUG-UCGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.