miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26830 5' -53.1 NC_005809.1 + 11440 0.75 0.282021
Target:  5'- gGUCGCCGauaaggcGCGACAcCGGCAGCuuuucaGUGGc -3'
miRNA:   3'- aCAGCGGU-------UGCUGUaGCUGUCG------CACC- -5'
26830 5' -53.1 NC_005809.1 + 11489 0.68 0.65361
Target:  5'- gGUCGCCuGCGACAcCGcaaaggGCAGCGccugcgcUGGc -3'
miRNA:   3'- aCAGCGGuUGCUGUaGC------UGUCGC-------ACC- -5'
26830 5' -53.1 NC_005809.1 + 12028 0.7 0.553972
Target:  5'- cGUgGCCGGCGAgGUCuugccCAGCGUGu -3'
miRNA:   3'- aCAgCGGUUGCUgUAGcu---GUCGCACc -5'
26830 5' -53.1 NC_005809.1 + 13073 0.67 0.721358
Target:  5'- cGUCGCCAuUGACGUgGACAcgaccgacGCGgaacUGGc -3'
miRNA:   3'- aCAGCGGUuGCUGUAgCUGU--------CGC----ACC- -5'
26830 5' -53.1 NC_005809.1 + 13616 0.66 0.794675
Target:  5'- -cUUGCCGACaGCAUCGGUAGCGg-- -3'
miRNA:   3'- acAGCGGUUGcUGUAGCUGUCGCacc -5'
26830 5' -53.1 NC_005809.1 + 13867 0.68 0.654734
Target:  5'- cGUgCGCCGACaGCAUCGACcuUGUGa -3'
miRNA:   3'- aCA-GCGGUUGcUGUAGCUGucGCACc -5'
26830 5' -53.1 NC_005809.1 + 13932 0.67 0.699392
Target:  5'- aUGUCGCgCAGCGcCGUgGACuggaugcccucGGaCGUGGa -3'
miRNA:   3'- -ACAGCG-GUUGCuGUAgCUG-----------UC-GCACC- -5'
26830 5' -53.1 NC_005809.1 + 14346 0.7 0.553971
Target:  5'- aGUCcgacCCGcGCGugGUCGuCGGCGUGGc -3'
miRNA:   3'- aCAGc---GGU-UGCugUAGCuGUCGCACC- -5'
26830 5' -53.1 NC_005809.1 + 14981 0.76 0.275528
Target:  5'- gGUCGCCAgaAUGGCGUCGGCAuugGCGUu- -3'
miRNA:   3'- aCAGCGGU--UGCUGUAGCUGU---CGCAcc -5'
26830 5' -53.1 NC_005809.1 + 15403 0.68 0.665959
Target:  5'- gGUCGUCGA-GGCAUCcGCGugcggcGCGUGGg -3'
miRNA:   3'- aCAGCGGUUgCUGUAGcUGU------CGCACC- -5'
26830 5' -53.1 NC_005809.1 + 16437 0.74 0.329229
Target:  5'- -aUCGCCGGCGGCGUUGAacaCGGCGUc- -3'
miRNA:   3'- acAGCGGUUGCUGUAGCU---GUCGCAcc -5'
26830 5' -53.1 NC_005809.1 + 18467 0.67 0.732208
Target:  5'- cGgCGCCGGCGGCGUCGGCcGauucguccacCGUGa -3'
miRNA:   3'- aCaGCGGUUGCUGUAGCUGuC----------GCACc -5'
26830 5' -53.1 NC_005809.1 + 18763 0.67 0.741884
Target:  5'- -uUUGCCGGCGAuuucuucCAUCGuCAGCGUcgaGGc -3'
miRNA:   3'- acAGCGGUUGCU-------GUAGCuGUCGCA---CC- -5'
26830 5' -53.1 NC_005809.1 + 19028 0.73 0.399579
Target:  5'- aUGUCgGCCGAgGcCAUCGACcGCGUGc -3'
miRNA:   3'- -ACAG-CGGUUgCuGUAGCUGuCGCACc -5'
26830 5' -53.1 NC_005809.1 + 19049 0.85 0.063512
Target:  5'- gGcCGCCGGCGGCGUCGAuCAGCGUGu -3'
miRNA:   3'- aCaGCGGUUGCUGUAGCU-GUCGCACc -5'
26830 5' -53.1 NC_005809.1 + 19215 0.69 0.598492
Target:  5'- --aCGCCAcCGuguuCAUCGGCGGCGaGGc -3'
miRNA:   3'- acaGCGGUuGCu---GUAGCUGUCGCaCC- -5'
26830 5' -53.1 NC_005809.1 + 19470 0.72 0.438175
Target:  5'- cUGUCGCCGugGGCGccgcCGuuGGCGUcGGg -3'
miRNA:   3'- -ACAGCGGUugCUGUa---GCugUCGCA-CC- -5'
26830 5' -53.1 NC_005809.1 + 19626 0.73 0.390274
Target:  5'- gGUCaugcggGCC-GCGACAUCGGcCAGCGUcGGg -3'
miRNA:   3'- aCAG------CGGuUGCUGUAGCU-GUCGCA-CC- -5'
26830 5' -53.1 NC_005809.1 + 19738 0.67 0.753581
Target:  5'- cG-CGCUGuCGGCuGUCGGCAGCGcGGc -3'
miRNA:   3'- aCaGCGGUuGCUG-UAGCUGUCGCaCC- -5'
26830 5' -53.1 NC_005809.1 + 19928 0.66 0.794675
Target:  5'- uUGUCGCCGcCGAacuccuuGUCGGC--CGUGGa -3'
miRNA:   3'- -ACAGCGGUuGCUg------UAGCUGucGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.