Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26830 | 5' | -53.1 | NC_005809.1 | + | 4876 | 0.67 | 0.742953 |
Target: 5'- cGUUGcCCAGCG-CggCGACGGCGg-- -3' miRNA: 3'- aCAGC-GGUUGCuGuaGCUGUCGCacc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 5335 | 0.69 | 0.620969 |
Target: 5'- cGUgGCgCAGCauGGCAUCGcGCuGCGUGGc -3' miRNA: 3'- aCAgCG-GUUG--CUGUAGC-UGuCGCACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 5351 | 0.72 | 0.448154 |
Target: 5'- aUGUCGUUGGCGACAgccaacaugcUCGACAgguGCGUGc -3' miRNA: 3'- -ACAGCGGUUGCUGU----------AGCUGU---CGCACc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 5420 | 0.68 | 0.654734 |
Target: 5'- cGUaCGCUccACGGCGcggaUGGCGGCGUGGg -3' miRNA: 3'- aCA-GCGGu-UGCUGUa---GCUGUCGCACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 5553 | 0.73 | 0.408073 |
Target: 5'- gGUCGCCcgccACGGUAUCGACGGCGccaacgcUGGc -3' miRNA: 3'- aCAGCGGu---UGCUGUAGCUGUCGC-------ACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 5617 | 0.67 | 0.753581 |
Target: 5'- gGUaGCC-ACGGCGUCGAUguuGGCGaGGu -3' miRNA: 3'- aCAgCGGuUGCUGUAGCUG---UCGCaCC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 5804 | 0.66 | 0.784638 |
Target: 5'- cGgcagCGCCAGCGGauaGUCGGgcaUGGCGUGc -3' miRNA: 3'- aCa---GCGGUUGCUg--UAGCU---GUCGCACc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 5896 | 0.68 | 0.66596 |
Target: 5'- gGUCGCCAGCGugGU-GAguGUGccgccgGGa -3' miRNA: 3'- aCAGCGGUUGCugUAgCUguCGCa-----CC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 6297 | 0.8 | 0.139249 |
Target: 5'- gGUCGCCcACGACAUUGACGGCa--- -3' miRNA: 3'- aCAGCGGuUGCUGUAGCUGUCGcacc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 7261 | 0.68 | 0.643486 |
Target: 5'- aUGUCGCCGGCcuuguGCAgcuucUCGGCGGUGgucGGa -3' miRNA: 3'- -ACAGCGGUUGc----UGU-----AGCUGUCGCa--CC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 7511 | 0.7 | 0.54737 |
Target: 5'- gGUUGCCGaggAUGGCGuugucuaccgugcgcUCGGCGGCGUGc -3' miRNA: 3'- aCAGCGGU---UGCUGU---------------AGCUGUCGCACc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 7592 | 0.78 | 0.18425 |
Target: 5'- aGUCGUCGGCGACgGUgGACAGCacGUGGu -3' miRNA: 3'- aCAGCGGUUGCUG-UAgCUGUCG--CACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 8202 | 0.66 | 0.794675 |
Target: 5'- -uUCGUCAGCGACAU-GGCGGCc--- -3' miRNA: 3'- acAGCGGUUGCUGUAgCUGUCGcacc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 8647 | 0.66 | 0.794675 |
Target: 5'- gGUCGCCGgccuucaucGCGcgGUCGGCAuuGCGUGc -3' miRNA: 3'- aCAGCGGU---------UGCugUAGCUGU--CGCACc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 8904 | 0.66 | 0.773407 |
Target: 5'- aUGgCGCUAucgGCGGCGcgcUCGAUggcuucgGGCGUGGa -3' miRNA: 3'- -ACaGCGGU---UGCUGU---AGCUG-------UCGCACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 9116 | 0.67 | 0.732208 |
Target: 5'- -uUCGCCAGCGguggccguGCcgCGAUAGCcagcgGUGGc -3' miRNA: 3'- acAGCGGUUGC--------UGuaGCUGUCG-----CACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 9185 | 0.68 | 0.677153 |
Target: 5'- uUGgCGCCGuCGACGuuggccugcUCGGCGGCGcGGc -3' miRNA: 3'- -ACaGCGGUuGCUGU---------AGCUGUCGCaCC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 9260 | 0.67 | 0.732208 |
Target: 5'- -uUCGCCAGCGguggccguGCcgCGAUAGCcagcgGUGGc -3' miRNA: 3'- acAGCGGUUGC--------UGuaGCUGUCG-----CACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 9847 | 0.69 | 0.598493 |
Target: 5'- -cUCGgUuuCGGCGUCGAUgAGCGUGGc -3' miRNA: 3'- acAGCgGuuGCUGUAGCUG-UCGCACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 10145 | 0.68 | 0.677152 |
Target: 5'- aGUCGCUGcCGuCGUCuuGGCAGaCGUGGc -3' miRNA: 3'- aCAGCGGUuGCuGUAG--CUGUC-GCACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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