miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26830 5' -53.1 NC_005809.1 + 41275 0.76 0.268455
Target:  5'- cGUCGCCcugGGCG-CGGCGGUGUGGg -3'
miRNA:   3'- aCAGCGGuugCUGUaGCUGUCGCACC- -5'
26830 5' -53.1 NC_005809.1 + 40863 0.7 0.565025
Target:  5'- uUGUCGCCAcCGACA-CGAUGGaCGaauUGGu -3'
miRNA:   3'- -ACAGCGGUuGCUGUaGCUGUC-GC---ACC- -5'
26830 5' -53.1 NC_005809.1 + 40705 0.67 0.721358
Target:  5'- gGUCGCCAAUuuCAUCaagcACGGCGaGGa -3'
miRNA:   3'- aCAGCGGUUGcuGUAGc---UGUCGCaCC- -5'
26830 5' -53.1 NC_005809.1 + 40551 0.66 0.764079
Target:  5'- -aUCGCCugcGCGACuUCGcCAGCGagcgccUGGg -3'
miRNA:   3'- acAGCGGu--UGCUGuAGCuGUCGC------ACC- -5'
26830 5' -53.1 NC_005809.1 + 40421 0.7 0.553971
Target:  5'- -uUCGCCAACGuguaCGGCGGCGcGGu -3'
miRNA:   3'- acAGCGGUUGCuguaGCUGUCGCaCC- -5'
26830 5' -53.1 NC_005809.1 + 38926 0.72 0.415717
Target:  5'- gGUUGCUuguggacgugggguAACGAguUCGGCGGCGUGa -3'
miRNA:   3'- aCAGCGG--------------UUGCUguAGCUGUCGCACc -5'
26830 5' -53.1 NC_005809.1 + 38890 0.75 0.28275
Target:  5'- cGUCGCCGugGugGauUCGcACgaaGGCGUGGa -3'
miRNA:   3'- aCAGCGGUugCugU--AGC-UG---UCGCACC- -5'
26830 5' -53.1 NC_005809.1 + 37784 0.67 0.699392
Target:  5'- aG-CGCCAGcCGGCGUgcUGggcGCAGUGUGGg -3'
miRNA:   3'- aCaGCGGUU-GCUGUA--GC---UGUCGCACC- -5'
26830 5' -53.1 NC_005809.1 + 37669 0.7 0.558386
Target:  5'- cGUCGCCGACcugucgaACAUCGAaggacgcaugauuGCGUGGc -3'
miRNA:   3'- aCAGCGGUUGc------UGUAGCUgu-----------CGCACC- -5'
26830 5' -53.1 NC_005809.1 + 37262 0.74 0.329229
Target:  5'- cGUgGCCGGCGACcuggaaaauAUCGACGcCGUGGc -3'
miRNA:   3'- aCAgCGGUUGCUG---------UAGCUGUcGCACC- -5'
26830 5' -53.1 NC_005809.1 + 37231 1.1 0.001119
Target:  5'- cUGUCGCCAACGACAUCGACAGCGUGGu -3'
miRNA:   3'- -ACAGCGGUUGCUGUAGCUGUCGCACC- -5'
26830 5' -53.1 NC_005809.1 + 37141 0.67 0.742953
Target:  5'- uUGUCGCaAACagUAUCGGCAaCGUGGa -3'
miRNA:   3'- -ACAGCGgUUGcuGUAGCUGUcGCACC- -5'
26830 5' -53.1 NC_005809.1 + 36954 0.68 0.654734
Target:  5'- -cUCGCCA---ACAUCGACGcCGUGGc -3'
miRNA:   3'- acAGCGGUugcUGUAGCUGUcGCACC- -5'
26830 5' -53.1 NC_005809.1 + 36579 0.8 0.135349
Target:  5'- cGUCGCCAuuuugaGCGACGcaGACGGUGUGGa -3'
miRNA:   3'- aCAGCGGU------UGCUGUagCUGUCGCACC- -5'
26830 5' -53.1 NC_005809.1 + 36495 0.66 0.784639
Target:  5'- cG-CGCuCGACGACuUCGagGCGGUGUGa -3'
miRNA:   3'- aCaGCG-GUUGCUGuAGC--UGUCGCACc -5'
26830 5' -53.1 NC_005809.1 + 36158 0.71 0.499826
Target:  5'- aGgCGCCAACGACAUgGGCcGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUAgCUGuCGCacc -5'
26830 5' -53.1 NC_005809.1 + 35745 0.66 0.784638
Target:  5'- cGUCGCCGAgGGCAaCGACGaaacccgcGcCGUGu -3'
miRNA:   3'- aCAGCGGUUgCUGUaGCUGU--------C-GCACc -5'
26830 5' -53.1 NC_005809.1 + 35325 0.7 0.521231
Target:  5'- ---gGCCGGCGACAUCGGCccgcGCcaGUGGc -3'
miRNA:   3'- acagCGGUUGCUGUAGCUGu---CG--CACC- -5'
26830 5' -53.1 NC_005809.1 + 35195 0.72 0.418607
Target:  5'- cGggCGUCAACGACGUgauucaCGACcuGGCGUGGc -3'
miRNA:   3'- aCa-GCGGUUGCUGUA------GCUG--UCGCACC- -5'
26830 5' -53.1 NC_005809.1 + 34992 0.77 0.217062
Target:  5'- cGUCGCCGACGACuUCGugGaCGUGu -3'
miRNA:   3'- aCAGCGGUUGCUGuAGCugUcGCACc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.