miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26831 3' -54.6 NC_005809.1 + 36990 0.74 0.272657
Target:  5'- gACAUCGACaCgGUGGCgGCCAGCGu- -3'
miRNA:   3'- -UGUAGCUGcGgCACCGaUGGUUGCuc -5'
26831 3' -54.6 NC_005809.1 + 37021 0.67 0.638031
Target:  5'- cCGUCGAUaCCGUGGCgggcgACCuggGCGGa -3'
miRNA:   3'- uGUAGCUGcGGCACCGa----UGGu--UGCUc -5'
26831 3' -54.6 NC_005809.1 + 8977 0.66 0.660475
Target:  5'- cCAgCGugGCCGUGccGCgauaGCCAGCGGu -3'
miRNA:   3'- uGUaGCugCGGCAC--CGa---UGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 24933 0.66 0.693906
Target:  5'- -gAUCGugGCCGUa-CUGCCcACGAu -3'
miRNA:   3'- ugUAGCugCGGCAccGAUGGuUGCUc -5'
26831 3' -54.6 NC_005809.1 + 16965 0.7 0.424015
Target:  5'- cGCcgCGcCGCCGUGGUUGCCAcuGCcuGGGc -3'
miRNA:   3'- -UGuaGCuGCGGCACCGAUGGU--UG--CUC- -5'
26831 3' -54.6 NC_005809.1 + 26132 0.69 0.494992
Target:  5'- ---aCGACGCCGUGuucaacGCcGCCGGCGAu -3'
miRNA:   3'- uguaGCUGCGGCAC------CGaUGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 26718 0.68 0.559826
Target:  5'- -gAUCGGCG-CGUGGC-ACCAGCa-- -3'
miRNA:   3'- ugUAGCUGCgGCACCGaUGGUUGcuc -5'
26831 3' -54.6 NC_005809.1 + 17030 0.68 0.582001
Target:  5'- uCAUCGGCuaCGgggGcGCUGCCGGCGGc -3'
miRNA:   3'- uGUAGCUGcgGCa--C-CGAUGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 36960 1.09 0.00085
Target:  5'- aACAUCGACGCCGUGGCUACCAACGAGg -3'
miRNA:   3'- -UGUAGCUGCGGCACCGAUGGUUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 27726 0.67 0.626795
Target:  5'- aGCGUgCGGCGC--UGGCcGCCAACGGc -3'
miRNA:   3'- -UGUA-GCUGCGgcACCGaUGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 37242 0.67 0.593157
Target:  5'- gACAUCGACaG-CGUGGUauccgugGCCGGCGAc -3'
miRNA:   3'- -UGUAGCUG-CgGCACCGa------UGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 39399 0.67 0.593157
Target:  5'- cGCAgcgGACGCCG-GGCuUGCCAugcuGCGAu -3'
miRNA:   3'- -UGUag-CUGCGGCaCCG-AUGGU----UGCUc -5'
26831 3' -54.6 NC_005809.1 + 20288 0.73 0.320969
Target:  5'- gACuUCGACGCCGUGGUcuaUcaccauucgcugacgGCCGGCGAa -3'
miRNA:   3'- -UGuAGCUGCGGCACCG---A---------------UGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 18815 0.67 0.604348
Target:  5'- cGCAUCGGC-CCgGUGGC-GCCGGCa-- -3'
miRNA:   3'- -UGUAGCUGcGG-CACCGaUGGUUGcuc -5'
26831 3' -54.6 NC_005809.1 + 23393 0.72 0.342349
Target:  5'- uCAUCGACGCCGgcGGCacgGgCAGCGAc -3'
miRNA:   3'- uGUAGCUGCGGCa-CCGa--UgGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 27597 0.67 0.593157
Target:  5'- ---cCGACGCCauucUGGCgACCGGCGAc -3'
miRNA:   3'- uguaGCUGCGGc---ACCGaUGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 25803 0.67 0.615564
Target:  5'- cCAUCGccuucacguCGCCgGUGGCUacGCCcACGAGc -3'
miRNA:   3'- uGUAGCu--------GCGG-CACCGA--UGGuUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 8455 0.66 0.660475
Target:  5'- gAUGUCGGCGUCGaGGUgGCCuGCGAu -3'
miRNA:   3'- -UGUAGCUGCGGCaCCGaUGGuUGCUc -5'
26831 3' -54.6 NC_005809.1 + 32922 0.71 0.386287
Target:  5'- cCAgCGGuucCGCCGUGGCUGCuCAACGuGu -3'
miRNA:   3'- uGUaGCU---GCGGCACCGAUG-GUUGCuC- -5'
26831 3' -54.6 NC_005809.1 + 2844 0.68 0.537893
Target:  5'- cGCAgCGGCGCCa--GC-ACCAGCGAGg -3'
miRNA:   3'- -UGUaGCUGCGGcacCGaUGGUUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.