miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26835 3' -55.3 NC_005809.1 + 30977 0.66 0.669972
Target:  5'- cUGCUGCccg-GCGG-CCAgcCGGCGGCc -3'
miRNA:   3'- -ACGACGcaagCGUCuGGUa-GCUGCCG- -5'
26835 3' -55.3 NC_005809.1 + 30360 0.66 0.669972
Target:  5'- gUGCUGCG-UC-CcGACCAggGGCaGGCa -3'
miRNA:   3'- -ACGACGCaAGcGuCUGGUagCUG-CCG- -5'
26835 3' -55.3 NC_005809.1 + 31082 0.66 0.669972
Target:  5'- cUGCccuuUGCGgugUCGCAggcGACCAUCGAauacGCc -3'
miRNA:   3'- -ACG----ACGCa--AGCGU---CUGGUAGCUgc--CG- -5'
26835 3' -55.3 NC_005809.1 + 28088 0.66 0.669972
Target:  5'- gGCcGCGgcgUCGUAuuCCGUCG-CGGUg -3'
miRNA:   3'- aCGaCGCa--AGCGUcuGGUAGCuGCCG- -5'
26835 3' -55.3 NC_005809.1 + 41429 0.66 0.65882
Target:  5'- cGacgGCGagCGCAaacGGCCGcugcucaugaUCGACGGCa -3'
miRNA:   3'- aCga-CGCaaGCGU---CUGGU----------AGCUGCCG- -5'
26835 3' -55.3 NC_005809.1 + 8559 0.66 0.655469
Target:  5'- cGCUcgaccucauccuggGCG-UCGUAGGCCGcgCGuGCGGCc -3'
miRNA:   3'- aCGA--------------CGCaAGCGUCUGGUa-GC-UGCCG- -5'
26835 3' -55.3 NC_005809.1 + 35459 0.66 0.647643
Target:  5'- cGCUGgGcaucaCGCAGuCCAUcgugcgCGugGGCg -3'
miRNA:   3'- aCGACgCaa---GCGUCuGGUA------GCugCCG- -5'
26835 3' -55.3 NC_005809.1 + 34349 0.66 0.647643
Target:  5'- cUGCUGaCGgcCGCcGACCAgcgCGACuacgaGGCc -3'
miRNA:   3'- -ACGAC-GCaaGCGuCUGGUa--GCUG-----CCG- -5'
26835 3' -55.3 NC_005809.1 + 5841 0.66 0.647643
Target:  5'- aGCaccgUGCGgUCGaaguGGCUAUUGugGGCg -3'
miRNA:   3'- aCG----ACGCaAGCgu--CUGGUAGCugCCG- -5'
26835 3' -55.3 NC_005809.1 + 8878 0.66 0.640929
Target:  5'- cGaaGCGggCGCGGGCauCAuugugaauggcgcuaUCGGCGGCg -3'
miRNA:   3'- aCgaCGCaaGCGUCUG--GU---------------AGCUGCCG- -5'
26835 3' -55.3 NC_005809.1 + 8187 0.66 0.640929
Target:  5'- aUGCUGCcggcgauuucaucgCGCAcGGCCucguagucgcgcugGUCGGCGGCc -3'
miRNA:   3'- -ACGACGcaa-----------GCGU-CUGG--------------UAGCUGCCG- -5'
26835 3' -55.3 NC_005809.1 + 19731 0.66 0.636452
Target:  5'- cGCaGCGcgCGCugucGGCUGUCGGCaGCg -3'
miRNA:   3'- aCGaCGCaaGCGu---CUGGUAGCUGcCG- -5'
26835 3' -55.3 NC_005809.1 + 9960 0.66 0.633093
Target:  5'- cGCgGCG-UCGCggcccuugaccGGGCCAgcuuggucacagcgUCGGCGGUg -3'
miRNA:   3'- aCGaCGCaAGCG-----------UCUGGU--------------AGCUGCCG- -5'
26835 3' -55.3 NC_005809.1 + 38693 0.66 0.625256
Target:  5'- gGCgGCGacggcagCGCGG-CCuacagCGACGGCg -3'
miRNA:   3'- aCGaCGCaa-----GCGUCuGGua---GCUGCCG- -5'
26835 3' -55.3 NC_005809.1 + 24477 0.66 0.625256
Target:  5'- cGCgaagGCGUccugguUCGCGccGGCU-UCGGCGGCc -3'
miRNA:   3'- aCGa---CGCA------AGCGU--CUGGuAGCUGCCG- -5'
26835 3' -55.3 NC_005809.1 + 37166 0.66 0.625256
Target:  5'- gUGgaGCGUaCGCAGaagguGCUcgCGGCGcGCa -3'
miRNA:   3'- -ACgaCGCAaGCGUC-----UGGuaGCUGC-CG- -5'
26835 3' -55.3 NC_005809.1 + 38374 0.67 0.602893
Target:  5'- cGCgacGUGcUCGCGGccaacaugcccGCCAUCGagGCGGCc -3'
miRNA:   3'- aCGa--CGCaAGCGUC-----------UGGUAGC--UGCCG- -5'
26835 3' -55.3 NC_005809.1 + 19019 0.67 0.602893
Target:  5'- cUGCcgGCGaugUCgGCcgAGGCCAUCGACcGCg -3'
miRNA:   3'- -ACGa-CGCa--AG-CG--UCUGGUAGCUGcCG- -5'
26835 3' -55.3 NC_005809.1 + 26437 0.67 0.602893
Target:  5'- aGCgUGCGgcCGCAGuccuacgucgggGCCAcCGACGuGCa -3'
miRNA:   3'- aCG-ACGCaaGCGUC------------UGGUaGCUGC-CG- -5'
26835 3' -55.3 NC_005809.1 + 32150 0.67 0.602893
Target:  5'- aGCUGUuggaaaugaaaaGUg-GCgAGGCCAUCGGCGcGCu -3'
miRNA:   3'- aCGACG------------CAagCG-UCUGGUAGCUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.