Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26835 | 3' | -55.3 | NC_005809.1 | + | 35257 | 1.12 | 0.000418 |
Target: 5'- cUGCUGCGUUCGCAGACCAUCGACGGCg -3' miRNA: 3'- -ACGACGCAAGCGUCUGGUAGCUGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 39078 | 0.68 | 0.504538 |
Target: 5'- cGCUGCGUacuggaaCGcCGGGCCGUCGAacuccaGcGCg -3' miRNA: 3'- aCGACGCAa------GC-GUCUGGUAGCUg-----C-CG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 37949 | 0.67 | 0.547596 |
Target: 5'- -cCUGCGgcagCGCGGGCCAacaUUGGCcuGGCu -3' miRNA: 3'- acGACGCaa--GCGUCUGGU---AGCUG--CCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 31082 | 0.66 | 0.669972 |
Target: 5'- cUGCccuuUGCGgugUCGCAggcGACCAUCGAauacGCc -3' miRNA: 3'- -ACG----ACGCa--AGCGU---CUGGUAGCUgc--CG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 1924 | 0.71 | 0.342034 |
Target: 5'- -cCUGCGUuccagUCGCGGAUCGUCuGCGGg -3' miRNA: 3'- acGACGCA-----AGCGUCUGGUAGcUGCCg -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 12426 | 0.71 | 0.35049 |
Target: 5'- cGCUGaUGUccgaCGCGGugCAggcCGGCGGCg -3' miRNA: 3'- aCGAC-GCAa---GCGUCugGUa--GCUGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 14517 | 0.7 | 0.409945 |
Target: 5'- cGCUGUucgaGCAGACCGUCGccgacguguucuuCGGCg -3' miRNA: 3'- aCGACGcaagCGUCUGGUAGCu------------GCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 6194 | 0.7 | 0.413746 |
Target: 5'- cGCaGCGUUUGCAGG----UGACGGCg -3' miRNA: 3'- aCGaCGCAAGCGUCUgguaGCUGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 30725 | 0.69 | 0.433068 |
Target: 5'- cGCgGgGUUCGCccAGGCCAaCcGCGGCg -3' miRNA: 3'- aCGaCgCAAGCG--UCUGGUaGcUGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 10202 | 0.68 | 0.504538 |
Target: 5'- cUGCUggGCGgcCG-GGGCC-UCGGCGGCg -3' miRNA: 3'- -ACGA--CGCaaGCgUCUGGuAGCUGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 29968 | 0.69 | 0.483559 |
Target: 5'- cGCgucgGCGccaugCGCAaauUCAUCGACGGCu -3' miRNA: 3'- aCGa---CGCaa---GCGUcu-GGUAGCUGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 38464 | 0.69 | 0.433068 |
Target: 5'- cGCUGCag-CGCAGGCUggCGgaaacaccACGGCg -3' miRNA: 3'- aCGACGcaaGCGUCUGGuaGC--------UGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 33375 | 0.76 | 0.17282 |
Target: 5'- cGCcGCGccgccgaGCAGGCCAacgUCGACGGCg -3' miRNA: 3'- aCGaCGCaag----CGUCUGGU---AGCUGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 21419 | 0.68 | 0.492949 |
Target: 5'- cGCUGUugaaccaGggCGCGGACa--CGGCGGCc -3' miRNA: 3'- aCGACG-------CaaGCGUCUGguaGCUGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 20728 | 0.72 | 0.29442 |
Target: 5'- -aCUGCGcaaggCGCAGGCCAUCGACu-- -3' miRNA: 3'- acGACGCaa---GCGUCUGGUAGCUGccg -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 27154 | 0.7 | 0.42334 |
Target: 5'- aGCUGUGgUUGCGcGugCAUCGGucgucCGGCa -3' miRNA: 3'- aCGACGCaAGCGU-CugGUAGCU-----GCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 39909 | 0.68 | 0.493998 |
Target: 5'- cUGCucgaUGCGacCGCaAGACC-UCGcACGGCa -3' miRNA: 3'- -ACG----ACGCaaGCG-UCUGGuAGC-UGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 8428 | 0.68 | 0.525901 |
Target: 5'- cGCggggGCG-UCGCGGAaCAUCGGC-GCg -3' miRNA: 3'- aCGa---CGCaAGCGUCUgGUAGCUGcCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 26801 | 0.71 | 0.342034 |
Target: 5'- aUGCcgucgUGCG-UCGC--ACCAUUGGCGGCa -3' miRNA: 3'- -ACG-----ACGCaAGCGucUGGUAGCUGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 1145 | 0.71 | 0.367845 |
Target: 5'- aGCgGcCGUUUGCGcucGCCGUCGAUGGUg -3' miRNA: 3'- aCGaC-GCAAGCGUc--UGGUAGCUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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