Results 1 - 20 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26842 | 3' | -61.9 | NC_005809.1 | + | 8206 | 0.66 | 0.300251 |
Target: 5'- cGCGCaCGGCCucguAGUCGCGCuggucGGcGGCCg -3' miRNA: 3'- -CGCG-GCUGGcu--UCGGUGCG-----UC-CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 27828 | 0.66 | 0.338429 |
Target: 5'- cGCGCUGcCCGcGGUgGCGCc-GGCCg -3' miRNA: 3'- -CGCGGCuGGCuUCGgUGCGucCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 33268 | 0.66 | 0.30687 |
Target: 5'- uGCGCCGccaggucGCCGAGGaagucaaUGCGCAgccgguguaccGGGCCg -3' miRNA: 3'- -CGCGGC-------UGGCUUCg------GUGCGU-----------CCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 25349 | 0.66 | 0.338429 |
Target: 5'- -gGCCGGCCaGuucgcauagccGGCCACcggGCAGGcGCCa -3' miRNA: 3'- cgCGGCUGGcU-----------UCGGUG---CGUCC-CGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 26982 | 0.66 | 0.338429 |
Target: 5'- -aGCCGACCGAcGCUGCaagaacuGGGGCUa -3' miRNA: 3'- cgCGGCUGGCUuCGGUGcg-----UCCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 29016 | 0.66 | 0.338429 |
Target: 5'- -aGgCGACCaGgcGCCGCGCuucGGCCa -3' miRNA: 3'- cgCgGCUGG-CuuCGGUGCGuc-CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 15120 | 0.66 | 0.307613 |
Target: 5'- cGCGCUGGCaua--CCAgCGcCAGGGCCUg -3' miRNA: 3'- -CGCGGCUGgcuucGGU-GC-GUCCCGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 30095 | 0.66 | 0.30318 |
Target: 5'- gGCGCCacGGCCcuugucccaggcgauGAGGCCGCGcCAGaacacgccgccGGCCUg -3' miRNA: 3'- -CGCGG--CUGG---------------CUUCGGUGC-GUC-----------CCGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 15459 | 0.66 | 0.307613 |
Target: 5'- cGCGCCcuuGGCCGAAGCUgccguccaguuGCaucgccaccgGCAGGGUUUg -3' miRNA: 3'- -CGCGG---CUGGCUUCGG-----------UG----------CGUCCCGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 41462 | 0.66 | 0.338429 |
Target: 5'- cGgGCCGAUgcgCGAcauGCCGCGCGacacGGCCa -3' miRNA: 3'- -CgCGGCUG---GCUu--CGGUGCGUc---CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 14812 | 0.66 | 0.300251 |
Target: 5'- cGUGuCCGAgCCGGacgagggcagcgAGUUGCGCgAGGGCCUc -3' miRNA: 3'- -CGC-GGCU-GGCU------------UCGGUGCG-UCCCGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 7557 | 0.66 | 0.330519 |
Target: 5'- cGCgGCCGGgucguacuuaaUCGGAuaguagccGCCGCGUAGGGUCa -3' miRNA: 3'- -CG-CGGCU-----------GGCUU--------CGGUGCGUCCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 22836 | 0.66 | 0.330519 |
Target: 5'- cGCGCUGccgacaGCCGAcAGCgCGCGCugcgaauuGGGCUg -3' miRNA: 3'- -CGCGGC------UGGCU-UCG-GUGCGu-------CCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 10891 | 0.66 | 0.328173 |
Target: 5'- cGCGCgGcguauuccuccACCGGAauggcgaccugcccGCCGguuUGCAGGGCCUc -3' miRNA: 3'- -CGCGgC-----------UGGCUU--------------CGGU---GCGUCCCGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 30417 | 0.66 | 0.322746 |
Target: 5'- uCGCuCGGCauggCGAugAGCgCGgGCAGGGCCUc -3' miRNA: 3'- cGCG-GCUG----GCU--UCG-GUgCGUCCCGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 27435 | 0.66 | 0.330519 |
Target: 5'- cGCGCCcggcGGCCGcAGGCCcugGCGCuGGuauGCCa -3' miRNA: 3'- -CGCGG----CUGGC-UUCGG---UGCGuCC---CGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 16650 | 0.66 | 0.318149 |
Target: 5'- gGUGCCGGCCGAcgagggagcggacucGGUuuuacccucggCAUcCAGGGCCg -3' miRNA: 3'- -CGCGGCUGGCU---------------UCG-----------GUGcGUCCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 5753 | 0.66 | 0.300251 |
Target: 5'- cGCGCCGGgCagcGAGUgCGC-CAGGGCCUu -3' miRNA: 3'- -CGCGGCUgGc--UUCG-GUGcGUCCCGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 24562 | 0.66 | 0.330519 |
Target: 5'- cGCGgCGAUggCGAggccGGCCACGgucGGGCCg -3' miRNA: 3'- -CGCgGCUG--GCU----UCGGUGCgu-CCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 1963 | 0.66 | 0.300251 |
Target: 5'- aGCGCgCGGCCcuggggGAAGgCACGCuguaGGCCg -3' miRNA: 3'- -CGCG-GCUGG------CUUCgGUGCGuc--CCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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