Results 21 - 40 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26842 | 3' | -61.9 | NC_005809.1 | + | 13462 | 0.72 | 0.117358 |
Target: 5'- cGCGCgUGACCGGcagcaAGUCcCGCAcGGGCCUg -3' miRNA: 3'- -CGCG-GCUGGCU-----UCGGuGCGU-CCCGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 17448 | 0.72 | 0.123957 |
Target: 5'- cCGCCagcaucgaGGCCaGguGCCACGcCAGGGCCUg -3' miRNA: 3'- cGCGG--------CUGG-CuuCGGUGC-GUCCCGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 20125 | 0.72 | 0.127384 |
Target: 5'- cCGUCG-UCGAAuGCCACGCcuucgGGGGCCUg -3' miRNA: 3'- cGCGGCuGGCUU-CGGUGCG-----UCCCGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 19787 | 0.71 | 0.134503 |
Target: 5'- aUGCUGACCG--GCC-CGCAGGGCg- -3' miRNA: 3'- cGCGGCUGGCuuCGGuGCGUCCCGga -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 24419 | 0.71 | 0.138198 |
Target: 5'- cGCaGCCGGcCCGAuuugucgguGCCGCGCGcGGCCUc -3' miRNA: 3'- -CG-CGGCU-GGCUu--------CGGUGCGUcCCGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 7144 | 0.71 | 0.141987 |
Target: 5'- uCGUCGGCUGcGGCCugGaugacCAGGGCCg -3' miRNA: 3'- cGCGGCUGGCuUCGGugC-----GUCCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 17074 | 0.71 | 0.141987 |
Target: 5'- cGCGCaCGAaggCGAAGCCgGCGCGguucucggccGGGCCUu -3' miRNA: 3'- -CGCG-GCUg--GCUUCGG-UGCGU----------CCCGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 36872 | 0.71 | 0.141987 |
Target: 5'- gGUGCCGACCGAcaaGGCCAagGaCAaGGCCg -3' miRNA: 3'- -CGCGGCUGGCU---UCGGUg-C-GUcCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 23524 | 0.71 | 0.14587 |
Target: 5'- aCGCUGAUCGAcGCCGC-CGGcGGCCg -3' miRNA: 3'- cGCGGCUGGCUuCGGUGcGUC-CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 26284 | 0.71 | 0.148645 |
Target: 5'- cGCGacgaCGACCGGguagccuuccggguGGCCGCGCGcGaGGCCa -3' miRNA: 3'- -CGCg---GCUGGCU--------------UCGGUGCGU-C-CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 33922 | 0.71 | 0.153104 |
Target: 5'- aUGCCGACCGccgaugaAGGCCGgcgaccucgccacCGCAGcGGCCg -3' miRNA: 3'- cGCGGCUGGC-------UUCGGU-------------GCGUC-CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 32696 | 0.71 | 0.153928 |
Target: 5'- cGCGCCuGGCCGAgaAGCagCGCGCcGGuGCCa -3' miRNA: 3'- -CGCGG-CUGGCU--UCG--GUGCGuCC-CGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 5126 | 0.7 | 0.158106 |
Target: 5'- gGCGCCGuugaACUGcaacguGCCGCGCAGGcgGCCg -3' miRNA: 3'- -CGCGGC----UGGCuu----CGGUGCGUCC--CGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 10464 | 0.7 | 0.161092 |
Target: 5'- gGCGUCGcCCugGAAGUCGCGCAgcaccggcccgaacGGGCCg -3' miRNA: 3'- -CGCGGCuGG--CUUCGGUGCGU--------------CCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 8557 | 0.7 | 0.165445 |
Target: 5'- cGCGCuCGACCucauccugggcgucGuAGGCCGCGCGuGcGGCCUg -3' miRNA: 3'- -CGCG-GCUGG--------------C-UUCGGUGCGU-C-CCGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 16312 | 0.7 | 0.166772 |
Target: 5'- -aGCCGACC-AGGCCG-GCGGGuGCCc -3' miRNA: 3'- cgCGGCUGGcUUCGGUgCGUCC-CGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 34174 | 0.7 | 0.166772 |
Target: 5'- gGCcCUGGCCGAcuGGCUACGCAGccagcgcgaGGCCg -3' miRNA: 3'- -CGcGGCUGGCU--UCGGUGCGUC---------CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 8806 | 0.7 | 0.171263 |
Target: 5'- cGCGCCGgucaguACCGAucugcugggucgGGCCAgcCGCAacgcGGGCCa -3' miRNA: 3'- -CGCGGC------UGGCU------------UCGGU--GCGU----CCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 1763 | 0.7 | 0.171263 |
Target: 5'- -gGCCGGCCugcGCCugGCGcgucGGGCCg -3' miRNA: 3'- cgCGGCUGGcuuCGGugCGU----CCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 35521 | 0.7 | 0.175861 |
Target: 5'- cGCuGCCGcCCGAGGCCAUGC---GCCUg -3' miRNA: 3'- -CG-CGGCuGGCUUCGGUGCGuccCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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