Results 1 - 20 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26842 | 3' | -61.9 | NC_005809.1 | + | 31711 | 1.09 | 0.000152 |
Target: 5'- cGCGCCGACCGAAGCCACGCAGGGCCUg -3' miRNA: 3'- -CGCGGCUGGCUUCGGUGCGUCCCGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 33922 | 0.71 | 0.153104 |
Target: 5'- aUGCCGACCGccgaugaAGGCCGgcgaccucgccacCGCAGcGGCCg -3' miRNA: 3'- cGCGGCUGGC-------UUCGGU-------------GCGUC-CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 5126 | 0.7 | 0.158106 |
Target: 5'- gGCGCCGuugaACUGcaacguGCCGCGCAGGcgGCCg -3' miRNA: 3'- -CGCGGC----UGGCuu----CGGUGCGUCC--CGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 41462 | 0.66 | 0.338429 |
Target: 5'- cGgGCCGAUgcgCGAcauGCCGCGCGacacGGCCa -3' miRNA: 3'- -CgCGGCUG---GCUu--CGGUGCGUc---CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 33719 | 0.74 | 0.07961 |
Target: 5'- cGUGgCGACCGAGGCCaACGCGcuGGCCc -3' miRNA: 3'- -CGCgGCUGGCUUCGG-UGCGUc-CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 30280 | 0.73 | 0.09411 |
Target: 5'- aCGCCG-CCGuAGCCggcACGCuGGGCCa -3' miRNA: 3'- cGCGGCuGGCuUCGG---UGCGuCCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 9722 | 0.73 | 0.099477 |
Target: 5'- gGCGCCGACCGucugcGGCCAgGCGaaGCCg -3' miRNA: 3'- -CGCGGCUGGCu----UCGGUgCGUccCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 16968 | 0.73 | 0.108071 |
Target: 5'- cGCGCCG-CCGugguuGCCACuGCcuGGGCCg -3' miRNA: 3'- -CGCGGCuGGCuu---CGGUG-CGu-CCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 13462 | 0.72 | 0.117358 |
Target: 5'- cGCGCgUGACCGGcagcaAGUCcCGCAcGGGCCUg -3' miRNA: 3'- -CGCG-GCUGGCU-----UCGGuGCGU-CCCGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 26284 | 0.71 | 0.148645 |
Target: 5'- cGCGacgaCGACCGGguagccuuccggguGGCCGCGCGcGaGGCCa -3' miRNA: 3'- -CGCg---GCUGGCU--------------UCGGUGCGU-C-CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 19787 | 0.71 | 0.134503 |
Target: 5'- aUGCUGACCG--GCC-CGCAGGGCg- -3' miRNA: 3'- cGCGGCUGGCuuCGGuGCGUCCCGga -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 23882 | 0.72 | 0.113869 |
Target: 5'- uGCuGCUGACCGAGGcCCGCGUGGuguaacaGGCCg -3' miRNA: 3'- -CG-CGGCUGGCUUC-GGUGCGUC-------CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 34461 | 0.76 | 0.0584 |
Target: 5'- aCGCCGGCCGc-GCgGUGCAGGGCCUc -3' miRNA: 3'- cGCGGCUGGCuuCGgUGCGUCCCGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 7144 | 0.71 | 0.141987 |
Target: 5'- uCGUCGGCUGcGGCCugGaugacCAGGGCCg -3' miRNA: 3'- cGCGGCUGGCuUCGGugC-----GUCCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 41889 | 0.75 | 0.067261 |
Target: 5'- gGCGgcCCGGCCGgcGCCGcCGUAGGcGCCUg -3' miRNA: 3'- -CGC--GGCUGGCuuCGGU-GCGUCC-CGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 37697 | 0.73 | 0.111087 |
Target: 5'- -gGCCG-CCGucGCCGCGCuGGGCa- -3' miRNA: 3'- cgCGGCuGGCuuCGGUGCGuCCCGga -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 23524 | 0.71 | 0.14587 |
Target: 5'- aCGCUGAUCGAcGCCGC-CGGcGGCCg -3' miRNA: 3'- cGCGGCUGGCUuCGGUGcGUC-CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 32696 | 0.71 | 0.153928 |
Target: 5'- cGCGCCuGGCCGAgaAGCagCGCGCcGGuGCCa -3' miRNA: 3'- -CGCGG-CUGGCU--UCG--GUGCGuCC-CGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 18133 | 0.75 | 0.074013 |
Target: 5'- aUGUCG-CCGAGGCCGCGCGcggcaccgacaaaucGGGCCg -3' miRNA: 3'- cGCGGCuGGCUUCGGUGCGU---------------CCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 30558 | 0.73 | 0.09411 |
Target: 5'- uCGCCGGCCacGGCCGCGCugcuGGCCg -3' miRNA: 3'- cGCGGCUGGcuUCGGUGCGuc--CCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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