miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26843 3' -60.5 NC_005809.1 + 31413 1.13 0.000105
Target:  5'- aGCGCACGCAACGUGCGCAGGCGGCCCa -3'
miRNA:   3'- -CGCGUGCGUUGCACGCGUCCGCCGGG- -5'
26843 3' -60.5 NC_005809.1 + 41970 0.71 0.185966
Target:  5'- cGCuGCugGcCGACc--CGCAGGCGGCCa -3'
miRNA:   3'- -CG-CGugC-GUUGcacGCGUCCGCCGGg -5'
26843 3' -60.5 NC_005809.1 + 30968 0.71 0.190943
Target:  5'- cCGCugGCAcugcugcccgGCG-GCcaGCcGGCGGCCCu -3'
miRNA:   3'- cGCGugCGU----------UGCaCG--CGuCCGCCGGG- -5'
26843 3' -60.5 NC_005809.1 + 32038 0.66 0.400343
Target:  5'- uUGCGCGUGGCG-GCGgaaAGcGUGGCCg -3'
miRNA:   3'- cGCGUGCGUUGCaCGCg--UC-CGCCGGg -5'
26843 3' -60.5 NC_005809.1 + 14307 0.77 0.068981
Target:  5'- aGCGCGCGguCAugGUGCGCAacauGGUGaGCCUg -3'
miRNA:   3'- -CGCGUGC--GUugCACGCGU----CCGC-CGGG- -5'
26843 3' -60.5 NC_005809.1 + 15821 0.76 0.07509
Target:  5'- uGCGCcuuauggaauCGCAGCGgGCGCGcuggcGGUGGCCCg -3'
miRNA:   3'- -CGCGu---------GCGUUGCaCGCGU-----CCGCCGGG- -5'
26843 3' -60.5 NC_005809.1 + 14014 0.74 0.1174
Target:  5'- cGUGCGCGCcGCGaUG-GCcGGCGGCCg -3'
miRNA:   3'- -CGCGUGCGuUGC-ACgCGuCCGCCGGg -5'
26843 3' -60.5 NC_005809.1 + 26514 0.74 0.118702
Target:  5'- cGCGCGCgGCGgccACGUGCGCGaacuggccuacaacuGGCaGGCCa -3'
miRNA:   3'- -CGCGUG-CGU---UGCACGCGU---------------CCG-CCGGg -5'
26843 3' -60.5 NC_005809.1 + 4044 0.72 0.142204
Target:  5'- -gGC-CGCGGCGaGCgGCAGGCcagcGGCCCa -3'
miRNA:   3'- cgCGuGCGUUGCaCG-CGUCCG----CCGGG- -5'
26843 3' -60.5 NC_005809.1 + 5625 0.71 0.171258
Target:  5'- uCGCGCGUGGCGcgGCGCAgcuugcuGGUGGCUg -3'
miRNA:   3'- cGCGUGCGUUGCa-CGCGU-------CCGCCGGg -5'
26843 3' -60.5 NC_005809.1 + 8434 0.72 0.146116
Target:  5'- gGCGUcgcggaacaucgGCGCGAUGUcgGCGUcgAGGUGGCCUg -3'
miRNA:   3'- -CGCG------------UGCGUUGCA--CGCG--UCCGCCGGG- -5'
26843 3' -60.5 NC_005809.1 + 10865 0.73 0.124044
Target:  5'- cCGCGCGCGGCGgGCugguCAGGCGGUgCu -3'
miRNA:   3'- cGCGUGCGUUGCaCGc---GUCCGCCGgG- -5'
26843 3' -60.5 NC_005809.1 + 5126 0.82 0.028347
Target:  5'- gGCGCcguugaACuGCAACGUgccGCGCAGGCGGCCg -3'
miRNA:   3'- -CGCG------UG-CGUUGCA---CGCGUCCGCCGGg -5'
26843 3' -60.5 NC_005809.1 + 1086 0.72 0.162766
Target:  5'- gGCGCGCGUAcuucauguugGCG-GCgGUAGGCGGCa- -3'
miRNA:   3'- -CGCGUGCGU----------UGCaCG-CGUCCGCCGgg -5'
26843 3' -60.5 NC_005809.1 + 14765 0.77 0.061575
Target:  5'- aGCGCGCGCGaggACGUGCuGCGGcugcGCGGCgCg -3'
miRNA:   3'- -CGCGUGCGU---UGCACG-CGUC----CGCCGgG- -5'
26843 3' -60.5 NC_005809.1 + 2776 0.73 0.12068
Target:  5'- cCGaCACcuCGACGuUGCGCAGGUGcGCCCa -3'
miRNA:   3'- cGC-GUGc-GUUGC-ACGCGUCCGC-CGGG- -5'
26843 3' -60.5 NC_005809.1 + 29007 0.71 0.167187
Target:  5'- aGCGCGCGUucaacaucgcCGUGgGCaccgagucAGGCGGCCg -3'
miRNA:   3'- -CGCGUGCGuu--------GCACgCG--------UCCGCCGGg -5'
26843 3' -60.5 NC_005809.1 + 21233 0.71 0.185966
Target:  5'- uCGUugGCAACcuggGCGC-GGUGGCCg -3'
miRNA:   3'- cGCGugCGUUGca--CGCGuCCGCCGGg -5'
26843 3' -60.5 NC_005809.1 + 34525 0.77 0.065177
Target:  5'- gGCGCGCGUcaugGACG-GCgGCAaggacGGCGGCCCu -3'
miRNA:   3'- -CGCGUGCG----UUGCaCG-CGU-----CCGCCGGG- -5'
26843 3' -60.5 NC_005809.1 + 524 0.74 0.1174
Target:  5'- uCGCugGCcgaauaccucgGACGUGCGCGGGCcGCUg -3'
miRNA:   3'- cGCGugCG-----------UUGCACGCGUCCGcCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.