Results 21 - 40 of 264 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26851 | 3' | -59.7 | NC_005809.1 | + | 11263 | 0.75 | 0.100257 |
Target: 5'- gGGUUUGCGCUGCggcgCUGgGACGCuCGGCCa -3' miRNA: 3'- -UCGGAUGCGGCG----GAUgUUGCG-GCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 4630 | 0.75 | 0.103109 |
Target: 5'- uGGCCcGCGCUGCC-GCAGgGUCGGCa -3' miRNA: 3'- -UCGGaUGCGGCGGaUGUUgCGGCCGg -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 40553 | 0.75 | 0.10311 |
Target: 5'- cGCCUGCGCgacuuCGCCaGCgAGCGCCugGGCCu -3' miRNA: 3'- uCGGAUGCG-----GCGGaUG-UUGCGG--CCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 5175 | 0.75 | 0.105446 |
Target: 5'- uGCCUGCcaCCGCCUGCAcgucgucgauauUGCCGGCUa -3' miRNA: 3'- uCGGAUGc-GGCGGAUGUu-----------GCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 36197 | 0.75 | 0.106038 |
Target: 5'- cGGCCUGCGCCugaUUGcCGACGUgGGCCg -3' miRNA: 3'- -UCGGAUGCGGcg-GAU-GUUGCGgCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 593 | 0.75 | 0.106038 |
Target: 5'- gAGUUUGaugGCCGCCUGCGG-GUCGGCCa -3' miRNA: 3'- -UCGGAUg--CGGCGGAUGUUgCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 23942 | 0.75 | 0.109045 |
Target: 5'- uGGUCagGCGCCGCCcgGCGAgGUCGGCa -3' miRNA: 3'- -UCGGa-UGCGGCGGa-UGUUgCGGCCGg -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 38701 | 0.75 | 0.109045 |
Target: 5'- cGGCa-GCGCgGCCUACAGCGaCGGCg -3' miRNA: 3'- -UCGgaUGCGgCGGAUGUUGCgGCCGg -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 37730 | 0.75 | 0.11027 |
Target: 5'- aAGCUg--GCCGCUUuccgugaauucgacgACGGCGCCGGCCc -3' miRNA: 3'- -UCGGaugCGGCGGA---------------UGUUGCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 25997 | 0.74 | 0.113389 |
Target: 5'- cGGCCUcguccggcGCGUCGCgCUACAACGUcuauaaggagcaaggCGGCCu -3' miRNA: 3'- -UCGGA--------UGCGGCG-GAUGUUGCG---------------GCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 17244 | 0.74 | 0.114341 |
Target: 5'- cGGCCUggacaaucccggcgACGagCGCCggugGCAGgGCCGGCCg -3' miRNA: 3'- -UCGGA--------------UGCg-GCGGa---UGUUgCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 29177 | 0.74 | 0.1153 |
Target: 5'- cGCaacgAUGCCGCCUACAaccgcGCGCUGGgCa -3' miRNA: 3'- uCGga--UGCGGCGGAUGU-----UGCGGCCgG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 8386 | 0.74 | 0.1153 |
Target: 5'- cGGCCUcGCGCUGgCUGCGuagccaGUCGGCCa -3' miRNA: 3'- -UCGGA-UGCGGCgGAUGUug----CGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 20190 | 0.74 | 0.1153 |
Target: 5'- cGCCUuguCGUCGCCcucggucuugGCAGCGCCcgcGGCCg -3' miRNA: 3'- uCGGAu--GCGGCGGa---------UGUUGCGG---CCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 31142 | 0.74 | 0.1153 |
Target: 5'- cGCCUuauCGgCGaCCUGC-ACGCCGGCUc -3' miRNA: 3'- uCGGAu--GCgGC-GGAUGuUGCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 29358 | 0.74 | 0.116591 |
Target: 5'- aGGaCUACGUgGUCaagaacaugcaggcgUACAACGCCGGCCa -3' miRNA: 3'- -UCgGAUGCGgCGG---------------AUGUUGCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 21955 | 0.74 | 0.118552 |
Target: 5'- cAGCCgACaCCGaCCUGCGACGCC-GCCu -3' miRNA: 3'- -UCGGaUGcGGC-GGAUGUUGCGGcCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 34859 | 0.74 | 0.118552 |
Target: 5'- gAGCgUGCGCUGCaguucaucgGCAA-GCCGGCCg -3' miRNA: 3'- -UCGgAUGCGGCGga-------UGUUgCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 730 | 0.74 | 0.121888 |
Target: 5'- gGGCg-GCuuUGCCgACAACGCCGGCCa -3' miRNA: 3'- -UCGgaUGcgGCGGaUGUUGCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 21179 | 0.74 | 0.125312 |
Target: 5'- cGGCCUgcuGCGCgGCCUGC--UGCUGGUCu -3' miRNA: 3'- -UCGGA---UGCGgCGGAUGuuGCGGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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