miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26851 5' -51.2 NC_005809.1 + 33928 0.68 0.759637
Target:  5'- aGCGAUaCGGCGCggccuGGGGCGUUuccgAAGGg -3'
miRNA:   3'- -CGUUA-GCCGCGacu--UUCUGCGG----UUCC- -5'
26851 5' -51.2 NC_005809.1 + 8125 0.68 0.770259
Target:  5'- cGCGGcCGGCGUUGGuuguGGGCGUgcGGGu -3'
miRNA:   3'- -CGUUaGCCGCGACUu---UCUGCGguUCC- -5'
26851 5' -51.2 NC_005809.1 + 32717 0.68 0.770259
Target:  5'- uGCAAUCaGGCGaUGGAGggcuGACGCCAu-- -3'
miRNA:   3'- -CGUUAG-CCGCgACUUU----CUGCGGUucc -5'
26851 5' -51.2 NC_005809.1 + 23498 0.68 0.774465
Target:  5'- uGCAAucgcgugaccUCGGCgaggacacGCUGAucGACGCCGccggcggccgcuaccAGGg -3'
miRNA:   3'- -CGUU----------AGCCG--------CGACUuuCUGCGGU---------------UCC- -5'
26851 5' -51.2 NC_005809.1 + 1465 0.68 0.780725
Target:  5'- cGCGGUCGGCGgccucCUGgcAG--GCCGGGGu -3'
miRNA:   3'- -CGUUAGCCGC-----GACuuUCugCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 6264 0.68 0.780726
Target:  5'- gGCGuugucUCGGUGUguucgcuuUGGcuGGGGCGCCGGGGc -3'
miRNA:   3'- -CGUu----AGCCGCG--------ACU--UUCUGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 31872 0.67 0.790003
Target:  5'- aGCAAUCGGCcgaggccgugcgcGCUGccgucAAGACGCaacuGGa -3'
miRNA:   3'- -CGUUAGCCG-------------CGACu----UUCUGCGguu-CC- -5'
26851 5' -51.2 NC_005809.1 + 34560 0.67 0.791024
Target:  5'- ----cCGGCGaaGcu-GGCGCCAAGGg -3'
miRNA:   3'- cguuaGCCGCgaCuuuCUGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 40503 0.67 0.791025
Target:  5'- aCAucgUGGUGCUGGgcGACGaccCCGAGGa -3'
miRNA:   3'- cGUua-GCCGCGACUuuCUGC---GGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 16084 0.67 0.795095
Target:  5'- uGCgAGUCGGCgaggaucacccgaauGCcaaacUGAcGGAUGCCGAGGu -3'
miRNA:   3'- -CG-UUAGCCG---------------CG-----ACUuUCUGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 18835 0.67 0.81107
Target:  5'- gGCA--UGGCGCUGcuGcGCGCCAccgAGGc -3'
miRNA:   3'- -CGUuaGCCGCGACuuUcUGCGGU---UCC- -5'
26851 5' -51.2 NC_005809.1 + 28816 0.67 0.81107
Target:  5'- cGCucauGUCGGCGCUGGAAcaaaacaacccGACcuauGCCucGGc -3'
miRNA:   3'- -CGu---UAGCCGCGACUUU-----------CUG----CGGuuCC- -5'
26851 5' -51.2 NC_005809.1 + 15111 0.67 0.819829
Target:  5'- cGUGcgCGGCGCgcu-GGcauaccaGCGCCAGGGc -3'
miRNA:   3'- -CGUuaGCCGCGacuuUC-------UGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 26758 0.67 0.820792
Target:  5'- -gAGUCcuGCGCggu-GGugGCCGAGGg -3'
miRNA:   3'- cgUUAGc-CGCGacuuUCugCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 18419 0.67 0.820792
Target:  5'- cGCAgccGUCgaGGCGCUGGGccAGGCGCgCAGccGGc -3'
miRNA:   3'- -CGU---UAG--CCGCGACUU--UCUGCG-GUU--CC- -5'
26851 5' -51.2 NC_005809.1 + 30171 0.67 0.829357
Target:  5'- gGCAGUUGGCGCcagucggUGAAggccaugaaguAGcCGCCGGGc -3'
miRNA:   3'- -CGUUAGCCGCG-------ACUU-----------UCuGCGGUUCc -5'
26851 5' -51.2 NC_005809.1 + 27380 0.67 0.830298
Target:  5'- cGCcAUCGGCGCauagGAGAaaAUGCCAugucAGGa -3'
miRNA:   3'- -CGuUAGCCGCGa---CUUUc-UGCGGU----UCC- -5'
26851 5' -51.2 NC_005809.1 + 14053 0.66 0.839577
Target:  5'- cGCGAaagccCGGCGCUGGgcGucguUGCCuAGGg -3'
miRNA:   3'- -CGUUa----GCCGCGACUuuCu---GCGGuUCC- -5'
26851 5' -51.2 NC_005809.1 + 27726 0.66 0.839578
Target:  5'- aGCGugCGGCGCUGGc---CGCCAAcGGc -3'
miRNA:   3'- -CGUuaGCCGCGACUuucuGCGGUU-CC- -5'
26851 5' -51.2 NC_005809.1 + 10423 0.66 0.839578
Target:  5'- gGCAAggucgaguUCGGCcUUGAGggauucggGGGCGUCGAGGu -3'
miRNA:   3'- -CGUU--------AGCCGcGACUU--------UCUGCGGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.