miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26851 5' -51.2 NC_005809.1 + 29295 1.14 0.000959
Target:  5'- uGCAAUCGGCGCUGAAAGACGCCAAGGa -3'
miRNA:   3'- -CGUUAGCCGCGACUUUCUGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 35787 0.79 0.216251
Target:  5'- cGCAAgucaaGGCGCUGAAccaggccaucgagcaGGuCGCCAAGGa -3'
miRNA:   3'- -CGUUag---CCGCGACUU---------------UCuGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 37556 0.78 0.238634
Target:  5'- gGCAucgCGGCGCUGAAAGcggacuGCGCCGAc- -3'
miRNA:   3'- -CGUua-GCCGCGACUUUC------UGCGGUUcc -5'
26851 5' -51.2 NC_005809.1 + 13828 0.74 0.408506
Target:  5'- aGCGcaCcGCGCUGGAcGAUGCCAAGGc -3'
miRNA:   3'- -CGUuaGcCGCGACUUuCUGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 19340 0.73 0.490353
Target:  5'- aGCGA--GGCGCgGucGGugGCCGAGGc -3'
miRNA:   3'- -CGUUagCCGCGaCuuUCugCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 8439 0.73 0.490353
Target:  5'- cGCGgaacAUCGGCGCgauGucGGCGUCGAGGu -3'
miRNA:   3'- -CGU----UAGCCGCGac-UuuCUGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 35200 0.72 0.545189
Target:  5'- cGCGGUgccCGcCGCUGGAcgaacGACGCCGAGGu -3'
miRNA:   3'- -CGUUA---GCcGCGACUUu----CUGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 14735 0.71 0.567695
Target:  5'- aGCAG-CGGCGC-GGccGGCGCCAccgcGGGc -3'
miRNA:   3'- -CGUUaGCCGCGaCUuuCUGCGGU----UCC- -5'
26851 5' -51.2 NC_005809.1 + 28005 0.71 0.567695
Target:  5'- cCGAUgaGGCGCUGGAAGAaGCCGAu- -3'
miRNA:   3'- cGUUAg-CCGCGACUUUCUgCGGUUcc -5'
26851 5' -51.2 NC_005809.1 + 39158 0.71 0.601856
Target:  5'- aGUAG-CGGgGCcGAAAGGCcccGCCAAGGc -3'
miRNA:   3'- -CGUUaGCCgCGaCUUUCUG---CGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 32104 0.71 0.613312
Target:  5'- ----cCGGUGCUGcgcgacuuccagGgcGACGCCAAGGg -3'
miRNA:   3'- cguuaGCCGCGAC------------UuuCUGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 37299 0.7 0.624786
Target:  5'- aGCAAUCGaCGCUGGAAcGACGCa---- -3'
miRNA:   3'- -CGUUAGCcGCGACUUU-CUGCGguucc -5'
26851 5' -51.2 NC_005809.1 + 6626 0.7 0.636268
Target:  5'- gGCGcgUGGCGCUGcgcgcGGACacguacagguuGCCGGGGa -3'
miRNA:   3'- -CGUuaGCCGCGACuu---UCUG-----------CGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 18065 0.7 0.636268
Target:  5'- cGUGAUCGGCGU----GGGCGCCAGc- -3'
miRNA:   3'- -CGUUAGCCGCGacuuUCUGCGGUUcc -5'
26851 5' -51.2 NC_005809.1 + 38717 0.7 0.647745
Target:  5'- aGCGA-CGGCGcCUGGuacaacuuCGCCGAGGu -3'
miRNA:   3'- -CGUUaGCCGC-GACUuucu----GCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 11270 0.7 0.670641
Target:  5'- cGCug-CGGCGCUG--GGACGCuCGgccAGGu -3'
miRNA:   3'- -CGuuaGCCGCGACuuUCUGCG-GU---UCC- -5'
26851 5' -51.2 NC_005809.1 + 10176 0.69 0.703534
Target:  5'- cGCGGcuuuuuuUCGGUGCUGGcuuccugcuGGGCGgCCGGGGc -3'
miRNA:   3'- -CGUU-------AGCCGCGACUu--------UCUGC-GGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 32865 0.68 0.736884
Target:  5'- aCGGUCGGCGCcGAGAuugucGCGCCcgacuggAAGGa -3'
miRNA:   3'- cGUUAGCCGCGaCUUUc----UGCGG-------UUCC- -5'
26851 5' -51.2 NC_005809.1 + 15263 0.68 0.737981
Target:  5'- cGCGccuGUgGGCGUcgugGGAAGccuuCGCCAAGGc -3'
miRNA:   3'- -CGU---UAgCCGCGa---CUUUCu---GCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 33928 0.68 0.759637
Target:  5'- aGCGAUaCGGCGCggccuGGGGCGUUuccgAAGGg -3'
miRNA:   3'- -CGUUA-GCCGCGacu--UUCUGCGG----UUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.