miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26851 5' -51.2 NC_005809.1 + 35787 0.79 0.216251
Target:  5'- cGCAAgucaaGGCGCUGAAccaggccaucgagcaGGuCGCCAAGGa -3'
miRNA:   3'- -CGUUag---CCGCGACUU---------------UCuGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 34560 0.67 0.791024
Target:  5'- ----cCGGCGaaGcu-GGCGCCAAGGg -3'
miRNA:   3'- cguuaGCCGCgaCuuuCUGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 30171 0.67 0.829357
Target:  5'- gGCAGUUGGCGCcagucggUGAAggccaugaaguAGcCGCCGGGc -3'
miRNA:   3'- -CGUUAGCCGCG-------ACUU-----------UCuGCGGUUCc -5'
26851 5' -51.2 NC_005809.1 + 14053 0.66 0.839577
Target:  5'- cGCGAaagccCGGCGCUGGgcGucguUGCCuAGGg -3'
miRNA:   3'- -CGUUa----GCCGCGACUuuCu---GCGGuUCC- -5'
26851 5' -51.2 NC_005809.1 + 34640 0.66 0.857415
Target:  5'- gGCcg-UGGCG-UGAAgguGGACGCCGAGc -3'
miRNA:   3'- -CGuuaGCCGCgACUU---UCUGCGGUUCc -5'
26851 5' -51.2 NC_005809.1 + 19324 0.66 0.857415
Target:  5'- uCGAUgaaGGCGCggucuucgGAcAGGCGCCAGGcGg -3'
miRNA:   3'- cGUUAg--CCGCGa-------CUuUCUGCGGUUC-C- -5'
26851 5' -51.2 NC_005809.1 + 30479 0.66 0.865953
Target:  5'- gGUcAUCGcGUcaccuGCUGAAAGuCGUCGAGGu -3'
miRNA:   3'- -CGuUAGC-CG-----CGACUUUCuGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 16439 0.66 0.874227
Target:  5'- cGCcggCGGCGUUGAAcacGGCGUCGuagaucGGGg -3'
miRNA:   3'- -CGuuaGCCGCGACUUu--CUGCGGU------UCC- -5'
26851 5' -51.2 NC_005809.1 + 26286 0.66 0.882228
Target:  5'- cGCGcAUCGcGCGC-GAuGGAUGCCAucaacGGa -3'
miRNA:   3'- -CGU-UAGC-CGCGaCUuUCUGCGGUu----CC- -5'
26851 5' -51.2 NC_005809.1 + 1465 0.68 0.780725
Target:  5'- cGCGGUCGGCGgccucCUGgcAG--GCCGGGGu -3'
miRNA:   3'- -CGUUAGCCGC-----GACuuUCugCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 32717 0.68 0.770259
Target:  5'- uGCAAUCaGGCGaUGGAGggcuGACGCCAu-- -3'
miRNA:   3'- -CGUUAG-CCGCgACUUU----CUGCGGUucc -5'
26851 5' -51.2 NC_005809.1 + 37556 0.78 0.238634
Target:  5'- gGCAucgCGGCGCUGAAAGcggacuGCGCCGAc- -3'
miRNA:   3'- -CGUua-GCCGCGACUUUC------UGCGGUUcc -5'
26851 5' -51.2 NC_005809.1 + 35200 0.72 0.545189
Target:  5'- cGCGGUgccCGcCGCUGGAcgaacGACGCCGAGGu -3'
miRNA:   3'- -CGUUA---GCcGCGACUUu----CUGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 28005 0.71 0.567695
Target:  5'- cCGAUgaGGCGCUGGAAGAaGCCGAu- -3'
miRNA:   3'- cGUUAg-CCGCGACUUUCUgCGGUUcc -5'
26851 5' -51.2 NC_005809.1 + 37299 0.7 0.624786
Target:  5'- aGCAAUCGaCGCUGGAAcGACGCa---- -3'
miRNA:   3'- -CGUUAGCcGCGACUUU-CUGCGguucc -5'
26851 5' -51.2 NC_005809.1 + 11270 0.7 0.670641
Target:  5'- cGCug-CGGCGCUG--GGACGCuCGgccAGGu -3'
miRNA:   3'- -CGuuaGCCGCGACuuUCUGCG-GU---UCC- -5'
26851 5' -51.2 NC_005809.1 + 32865 0.68 0.736884
Target:  5'- aCGGUCGGCGCcGAGAuugucGCGCCcgacuggAAGGa -3'
miRNA:   3'- cGUUAGCCGCGaCUUUc----UGCGG-------UUCC- -5'
26851 5' -51.2 NC_005809.1 + 33928 0.68 0.759637
Target:  5'- aGCGAUaCGGCGCggccuGGGGCGUUuccgAAGGg -3'
miRNA:   3'- -CGUUA-GCCGCGacu--UUCUGCGG----UUCC- -5'
26851 5' -51.2 NC_005809.1 + 8125 0.68 0.770259
Target:  5'- cGCGGcCGGCGUUGGuuguGGGCGUgcGGGu -3'
miRNA:   3'- -CGUUaGCCGCGACUu---UCUGCGguUCC- -5'
26851 5' -51.2 NC_005809.1 + 14183 0.66 0.874227
Target:  5'- cGCGccgcCGGCGUcGAAcuGGAacaccuCGCCAAGGa -3'
miRNA:   3'- -CGUua--GCCGCGaCUU--UCU------GCGGUUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.