miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26851 5' -51.2 NC_005809.1 + 1465 0.68 0.780725
Target:  5'- cGCGGUCGGCGgccucCUGgcAG--GCCGGGGu -3'
miRNA:   3'- -CGUUAGCCGC-----GACuuUCugCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 4103 0.66 0.874227
Target:  5'- gGUGggCGGCGCUGAAuu-CGUCGcGGu -3'
miRNA:   3'- -CGUuaGCCGCGACUUucuGCGGUuCC- -5'
26851 5' -51.2 NC_005809.1 + 6264 0.68 0.780726
Target:  5'- gGCGuugucUCGGUGUguucgcuuUGGcuGGGGCGCCGGGGc -3'
miRNA:   3'- -CGUu----AGCCGCG--------ACU--UUCUGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 6626 0.7 0.636268
Target:  5'- gGCGcgUGGCGCUGcgcgcGGACacguacagguuGCCGGGGa -3'
miRNA:   3'- -CGUuaGCCGCGACuu---UCUG-----------CGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 8125 0.68 0.770259
Target:  5'- cGCGGcCGGCGUUGGuuguGGGCGUgcGGGu -3'
miRNA:   3'- -CGUUaGCCGCGACUu---UCUGCGguUCC- -5'
26851 5' -51.2 NC_005809.1 + 8439 0.73 0.490353
Target:  5'- cGCGgaacAUCGGCGCgauGucGGCGUCGAGGu -3'
miRNA:   3'- -CGU----UAGCCGCGac-UuuCUGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 10176 0.69 0.703534
Target:  5'- cGCGGcuuuuuuUCGGUGCUGGcuuccugcuGGGCGgCCGGGGc -3'
miRNA:   3'- -CGUU-------AGCCGCGACUu--------UCUGC-GGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 10423 0.66 0.839578
Target:  5'- gGCAAggucgaguUCGGCcUUGAGggauucggGGGCGUCGAGGu -3'
miRNA:   3'- -CGUU--------AGCCGcGACUU--------UCUGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 11270 0.7 0.670641
Target:  5'- cGCug-CGGCGCUG--GGACGCuCGgccAGGu -3'
miRNA:   3'- -CGuuaGCCGCGACuuUCUGCG-GU---UCC- -5'
26851 5' -51.2 NC_005809.1 + 13828 0.74 0.408506
Target:  5'- aGCGcaCcGCGCUGGAcGAUGCCAAGGc -3'
miRNA:   3'- -CGUuaGcCGCGACUUuCUGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 14053 0.66 0.839577
Target:  5'- cGCGAaagccCGGCGCUGGgcGucguUGCCuAGGg -3'
miRNA:   3'- -CGUUa----GCCGCGACUuuCu---GCGGuUCC- -5'
26851 5' -51.2 NC_005809.1 + 14183 0.66 0.874227
Target:  5'- cGCGccgcCGGCGUcGAAcuGGAacaccuCGCCAAGGa -3'
miRNA:   3'- -CGUua--GCCGCGaCUU--UCU------GCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 14357 0.66 0.865953
Target:  5'- cGCGuggucGUCGGCGUggccgaccUGGAcaAGGCGCCGcaccugcuGGGc -3'
miRNA:   3'- -CGU-----UAGCCGCG--------ACUU--UCUGCGGU--------UCC- -5'
26851 5' -51.2 NC_005809.1 + 14735 0.71 0.567695
Target:  5'- aGCAG-CGGCGC-GGccGGCGCCAccgcGGGc -3'
miRNA:   3'- -CGUUaGCCGCGaCUuuCUGCGGU----UCC- -5'
26851 5' -51.2 NC_005809.1 + 15111 0.67 0.819829
Target:  5'- cGUGcgCGGCGCgcu-GGcauaccaGCGCCAGGGc -3'
miRNA:   3'- -CGUuaGCCGCGacuuUC-------UGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 15263 0.68 0.737981
Target:  5'- cGCGccuGUgGGCGUcgugGGAAGccuuCGCCAAGGc -3'
miRNA:   3'- -CGU---UAgCCGCGa---CUUUCu---GCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 15418 0.66 0.839578
Target:  5'- cGCGugCGGCGCgUGggGGACuUCGAGu -3'
miRNA:   3'- -CGUuaGCCGCG-ACuuUCUGcGGUUCc -5'
26851 5' -51.2 NC_005809.1 + 16084 0.67 0.795095
Target:  5'- uGCgAGUCGGCgaggaucacccgaauGCcaaacUGAcGGAUGCCGAGGu -3'
miRNA:   3'- -CG-UUAGCCG---------------CG-----ACUuUCUGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 16439 0.66 0.874227
Target:  5'- cGCcggCGGCGUUGAAcacGGCGUCGuagaucGGGg -3'
miRNA:   3'- -CGuuaGCCGCGACUUu--CUGCGGU------UCC- -5'
26851 5' -51.2 NC_005809.1 + 18065 0.7 0.636268
Target:  5'- cGUGAUCGGCGU----GGGCGCCAGc- -3'
miRNA:   3'- -CGUUAGCCGCGacuuUCUGCGGUUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.