Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26853 | 5' | -47.9 | NC_005809.1 | + | 41953 | 0.67 | 0.954436 |
Target: 5'- ---cCGCGccGAGGCUGAGGCCaUCa -3' miRNA: 3'- gcuaGCGUauUUCCGGCUUUGGaAGg -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 41526 | 0.72 | 0.773147 |
Target: 5'- cCGGuUCGCGgcGAcaugcugccgccGGCCGugGCCUUCCa -3' miRNA: 3'- -GCU-AGCGUauUU------------CCGGCuuUGGAAGG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 41214 | 0.69 | 0.901543 |
Target: 5'- uCGGUCGCcgGAugcgcaAGGCCGccGACCacggcUUCCu -3' miRNA: 3'- -GCUAGCGuaUU------UCCGGCu-UUGG-----AAGG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 37479 | 0.66 | 0.973284 |
Target: 5'- cCGGaCGCu---GGGCCGGccGCCUguUCCa -3' miRNA: 3'- -GCUaGCGuauuUCCGGCUu-UGGA--AGG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 35129 | 0.77 | 0.465902 |
Target: 5'- --uUCGCGcGAAGGCCGAAGCCgaacugcuggCCg -3' miRNA: 3'- gcuAGCGUaUUUCCGGCUUUGGaa--------GG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 34690 | 0.67 | 0.958775 |
Target: 5'- aGGgcaGCAUuucccgaccAucGGCCGAAGCCUgaaCCg -3' miRNA: 3'- gCUag-CGUA---------UuuCCGGCUUUGGAa--GG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 34128 | 0.71 | 0.804533 |
Target: 5'- uCGAUCuGCGcAAGGGCCaAAGCCUcaaggCCg -3' miRNA: 3'- -GCUAG-CGUaUUUCCGGcUUUGGAa----GG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 33925 | 0.76 | 0.543429 |
Target: 5'- cCGAcCGCcgAUGAAGGCCGGcGACCUcgCCa -3' miRNA: 3'- -GCUaGCG--UAUUUCCGGCU-UUGGAa-GG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 33034 | 0.68 | 0.915482 |
Target: 5'- aGAUCGCAcu--GGCCGAAcaggGCCg--- -3' miRNA: 3'- gCUAGCGUauuuCCGGCUU----UGGaagg -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 32363 | 0.68 | 0.921983 |
Target: 5'- gCGGUCGCcgccGAGGCCccGGCCgcCCa -3' miRNA: 3'- -GCUAGCGuau-UUCCGGcuUUGGaaGG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 31860 | 0.67 | 0.958354 |
Target: 5'- aCGA-CGCAUucaagcaAucGGCCGAGGCCgugcgcgcugCCg -3' miRNA: 3'- -GCUaGCGUA-------UuuCCGGCUUUGGaa--------GG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 30124 | 0.66 | 0.972974 |
Target: 5'- cCGAUCuugaGCAUGAAGGUCGGcgacaucGACagcgCCa -3' miRNA: 3'- -GCUAG----CGUAUUUCCGGCU-------UUGgaa-GG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 29491 | 0.77 | 0.49849 |
Target: 5'- uGcgCGCGUGGAGGCCGAGcGCCaaUUCa -3' miRNA: 3'- gCuaGCGUAUUUCCGGCUU-UGG--AAGg -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 28708 | 1.15 | 0.002081 |
Target: 5'- uCGAUCGCAUAAAGGCCGAAACCUUCCg -3' miRNA: 3'- -GCUAGCGUAUUUCCGGCUUUGGAAGG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 28622 | 0.71 | 0.814602 |
Target: 5'- cCGggCGCGgauGAGGCCG--GCCagUUCCg -3' miRNA: 3'- -GCuaGCGUau-UUCCGGCuuUGG--AAGG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 24566 | 0.67 | 0.939607 |
Target: 5'- gCGAUgGCG---AGGCCGGccacggucgGGCCgUCCg -3' miRNA: 3'- -GCUAgCGUauuUCCGGCU---------UUGGaAGG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 24116 | 0.68 | 0.908667 |
Target: 5'- aUGcgCGCGUAGGGGUCGuaguCCagCCg -3' miRNA: 3'- -GCuaGCGUAUUUCCGGCuuu-GGaaGG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 23713 | 0.67 | 0.958775 |
Target: 5'- cCGAaCGUGggcauGGGCCGcccGGCCUUCUa -3' miRNA: 3'- -GCUaGCGUauu--UCCGGCu--UUGGAAGG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 20318 | 0.68 | 0.921983 |
Target: 5'- cCGGUUGCgAUGcGGGCUG--GCCUUCa -3' miRNA: 3'- -GCUAGCG-UAUuUCCGGCuuUGGAAGg -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 19401 | 0.73 | 0.706286 |
Target: 5'- -uGUCGCAccagcaGGGGGCCGAAACCaUCa -3' miRNA: 3'- gcUAGCGUa-----UUUCCGGCUUUGGaAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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