miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26857 5' -52.9 NC_005809.1 + 27552 1.07 0.001819
Target:  5'- cCAACACCAACGCGGACACCAUCGAGUc -3'
miRNA:   3'- -GUUGUGGUUGCGCCUGUGGUAGCUCA- -5'
26857 5' -52.9 NC_005809.1 + 23655 0.83 0.091372
Target:  5'- aAACGCCAGCGCGGGCGCCGaccucaUCGAc- -3'
miRNA:   3'- gUUGUGGUUGCGCCUGUGGU------AGCUca -5'
26857 5' -52.9 NC_005809.1 + 34402 0.76 0.245974
Target:  5'- gGACGCCAGCGCcuuccugGGccGCAUCAUCGAGg -3'
miRNA:   3'- gUUGUGGUUGCG-------CC--UGUGGUAGCUCa -5'
26857 5' -52.9 NC_005809.1 + 38241 0.75 0.281525
Target:  5'- cCAGCAUCAAgGCuGGCACCAUCGuGg -3'
miRNA:   3'- -GUUGUGGUUgCGcCUGUGGUAGCuCa -5'
26857 5' -52.9 NC_005809.1 + 14748 0.74 0.336776
Target:  5'- cCGGCGCCAcCGCGGGCAgCGcgcgCGAGg -3'
miRNA:   3'- -GUUGUGGUuGCGCCUGUgGUa---GCUCa -5'
26857 5' -52.9 NC_005809.1 + 5573 0.72 0.399521
Target:  5'- aCGGCGCCAACGCuGGcCGCCAcCGuGUc -3'
miRNA:   3'- -GUUGUGGUUGCG-CCuGUGGUaGCuCA- -5'
26857 5' -52.9 NC_005809.1 + 17012 0.72 0.409075
Target:  5'- aCAACuCCGACGCcGACAUCAUCGGc- -3'
miRNA:   3'- -GUUGuGGUUGCGcCUGUGGUAGCUca -5'
26857 5' -52.9 NC_005809.1 + 36994 0.72 0.409075
Target:  5'- uCGACACgGugGCGGccagcguugGCGCCGUCGAu- -3'
miRNA:   3'- -GUUGUGgUugCGCC---------UGUGGUAGCUca -5'
26857 5' -52.9 NC_005809.1 + 2854 0.72 0.418771
Target:  5'- cCAGCACCAGCGagGGGCcugguucgACCAguUCGAGg -3'
miRNA:   3'- -GUUGUGGUUGCg-CCUG--------UGGU--AGCUCa -5'
26857 5' -52.9 NC_005809.1 + 27167 0.72 0.448673
Target:  5'- -cGCGCCGcACGCGGAUGCC-UCGAc- -3'
miRNA:   3'- guUGUGGU-UGCGCCUGUGGuAGCUca -5'
26857 5' -52.9 NC_005809.1 + 27585 0.71 0.458901
Target:  5'- gCAACGCCAAUGCcGACGCCAUUc--- -3'
miRNA:   3'- -GUUGUGGUUGCGcCUGUGGUAGcuca -5'
26857 5' -52.9 NC_005809.1 + 19348 0.71 0.4903
Target:  5'- aGGCGCCAgGCgGCGGAauuGCCGUUGAGg -3'
miRNA:   3'- gUUGUGGU-UG-CGCCUg--UGGUAGCUCa -5'
26857 5' -52.9 NC_005809.1 + 25964 0.7 0.511779
Target:  5'- --uCACCAACgGCGGcgccaACACCAUCGcGUg -3'
miRNA:   3'- guuGUGGUUG-CGCC-----UGUGGUAGCuCA- -5'
26857 5' -52.9 NC_005809.1 + 25012 0.7 0.511779
Target:  5'- aCAACACCGGCGCcGACAUCAUUc--- -3'
miRNA:   3'- -GUUGUGGUUGCGcCUGUGGUAGcuca -5'
26857 5' -52.9 NC_005809.1 + 24176 0.7 0.522664
Target:  5'- --uCGCCGACGUGGccgccaccgGCGCCAUCGGc- -3'
miRNA:   3'- guuGUGGUUGCGCC---------UGUGGUAGCUca -5'
26857 5' -52.9 NC_005809.1 + 18310 0.7 0.527042
Target:  5'- cCGGCGCCAcgcucaagguggcaaGcCGCgaGGACAUCAUCGAGa -3'
miRNA:   3'- -GUUGUGGU---------------U-GCG--CCUGUGGUAGCUCa -5'
26857 5' -52.9 NC_005809.1 + 29402 0.7 0.543581
Target:  5'- gGGCGCCcAGCGCGGccgACACuggccgaCAUCGAGg -3'
miRNA:   3'- gUUGUGG-UUGCGCC---UGUG-------GUAGCUCa -5'
26857 5' -52.9 NC_005809.1 + 18407 0.7 0.555818
Target:  5'- -cACGCCGaaGCGCGca-GCCGUCGAGg -3'
miRNA:   3'- guUGUGGU--UGCGCcugUGGUAGCUCa -5'
26857 5' -52.9 NC_005809.1 + 619 0.69 0.56701
Target:  5'- cCAGCAgCGcCGUGGACACggcguccggCGUCGAGUc -3'
miRNA:   3'- -GUUGUgGUuGCGCCUGUG---------GUAGCUCA- -5'
26857 5' -52.9 NC_005809.1 + 28680 0.69 0.589555
Target:  5'- --uCGCCAGCGCGGcGCGCCAcgUCGu-- -3'
miRNA:   3'- guuGUGGUUGCGCC-UGUGGU--AGCuca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.