Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26857 | 5' | -52.9 | NC_005809.1 | + | 461 | 0.68 | 0.635024 |
Target: 5'- ---gGCCAGCuuGCGGGCGCUGUCGcGGUc -3' miRNA: 3'- guugUGGUUG--CGCCUGUGGUAGC-UCA- -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 619 | 0.69 | 0.56701 |
Target: 5'- cCAGCAgCGcCGUGGACACggcguccggCGUCGAGUc -3' miRNA: 3'- -GUUGUgGUuGCGCCUGUG---------GUAGCUCA- -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 2854 | 0.72 | 0.418771 |
Target: 5'- cCAGCACCAGCGagGGGCcugguucgACCAguUCGAGg -3' miRNA: 3'- -GUUGUGGUUGCg-CCUG--------UGGU--AGCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 2943 | 0.66 | 0.778524 |
Target: 5'- -cACACCGcgucGCGCGG-CA-CGUCGAGc -3' miRNA: 3'- guUGUGGU----UGCGCCuGUgGUAGCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 4676 | 0.69 | 0.612253 |
Target: 5'- gGGCACCAGCGCgccGGAUAgCGcggCGAGa -3' miRNA: 3'- gUUGUGGUUGCG---CCUGUgGUa--GCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 5108 | 0.69 | 0.600889 |
Target: 5'- cCAGCGuCCggUGCGGcugGCGCCGUUGAa- -3' miRNA: 3'- -GUUGU-GGuuGCGCC---UGUGGUAGCUca -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 5573 | 0.72 | 0.399521 |
Target: 5'- aCGGCGCCAACGCuGGcCGCCAcCGuGUc -3' miRNA: 3'- -GUUGUGGUUGCG-CCuGUGGUaGCuCA- -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 7766 | 0.67 | 0.725069 |
Target: 5'- gCAGCACCGGCGCGaucuGCGCCggCGu-- -3' miRNA: 3'- -GUUGUGGUUGCGCc---UGUGGuaGCuca -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 8443 | 0.68 | 0.657785 |
Target: 5'- gAACAUCGGCGCGauguCGgCGUCGAGg -3' miRNA: 3'- gUUGUGGUUGCGCcu--GUgGUAGCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 8877 | 0.69 | 0.600889 |
Target: 5'- aCGAaGCgGGCGCGGGCAUCAUUGuGa -3' miRNA: 3'- -GUUgUGgUUGCGCCUGUGGUAGCuCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 11268 | 0.67 | 0.729457 |
Target: 5'- cCAGCcggGCCAccACGCGGuCGCCAggcuucgcugccacgUCGGGg -3' miRNA: 3'- -GUUG---UGGU--UGCGCCuGUGGU---------------AGCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 13939 | 0.66 | 0.788778 |
Target: 5'- gCAGCGCCGugGacuGGAUGCCcUCGGa- -3' miRNA: 3'- -GUUGUGGUugCg--CCUGUGGuAGCUca -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 14710 | 0.67 | 0.691704 |
Target: 5'- gAugGCgAGCGCGGACACguUCuuGAGc -3' miRNA: 3'- gUugUGgUUGCGCCUGUGguAG--CUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 14748 | 0.74 | 0.336776 |
Target: 5'- cCGGCGCCAcCGCGGGCAgCGcgcgCGAGg -3' miRNA: 3'- -GUUGUGGUuGCGCCUGUgGUa---GCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 14858 | 0.67 | 0.725069 |
Target: 5'- cCAGCGCCGcACGCuGGGCGCCuUUaAGUu -3' miRNA: 3'- -GUUGUGGU-UGCG-CCUGUGGuAGcUCA- -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 17012 | 0.72 | 0.409075 |
Target: 5'- aCAACuCCGACGCcGACAUCAUCGGc- -3' miRNA: 3'- -GUUGuGGUUGCGcCUGUGGUAGCUca -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 17783 | 0.68 | 0.646412 |
Target: 5'- gCGACuuCAACGCGGGCA---UCGAGg -3' miRNA: 3'- -GUUGugGUUGCGCCUGUgguAGCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 18064 | 0.67 | 0.691704 |
Target: 5'- aCGugAUCGGCGUGGGCGCCAgccccuaCGAc- -3' miRNA: 3'- -GUugUGGUUGCGCCUGUGGUa------GCUca -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 18139 | 0.66 | 0.757541 |
Target: 5'- cCGAgGCC-GCGCGcGGCACCGacaaaUCGGGc -3' miRNA: 3'- -GUUgUGGuUGCGC-CUGUGGU-----AGCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 18310 | 0.7 | 0.527042 |
Target: 5'- cCGGCGCCAcgcucaagguggcaaGcCGCgaGGACAUCAUCGAGa -3' miRNA: 3'- -GUUGUGGU---------------U-GCG--CCUGUGGUAGCUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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