Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26857 | 5' | -52.9 | NC_005809.1 | + | 34402 | 0.76 | 0.245974 |
Target: 5'- gGACGCCAGCGCcuuccugGGccGCAUCAUCGAGg -3' miRNA: 3'- gUUGUGGUUGCG-------CC--UGUGGUAGCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 14858 | 0.67 | 0.725069 |
Target: 5'- cCAGCGCCGcACGCuGGGCGCCuUUaAGUu -3' miRNA: 3'- -GUUGUGGU-UGCG-CCUGUGGuAGcUCA- -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 23097 | 0.67 | 0.736008 |
Target: 5'- cCGACGCCAACgGCGG-CGCCcacggCGAc- -3' miRNA: 3'- -GUUGUGGUUG-CGCCuGUGGua---GCUca -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 37524 | 0.66 | 0.745759 |
Target: 5'- ---gGCCugUGCucaagcaGGACGCCAUCGAGc -3' miRNA: 3'- guugUGGuuGCG-------CCUGUGGUAGCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 37620 | 0.66 | 0.746837 |
Target: 5'- gCAGCGCgAuACGCGG-CugCAUCGuGg -3' miRNA: 3'- -GUUGUGgU-UGCGCCuGugGUAGCuCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 32290 | 0.66 | 0.751134 |
Target: 5'- aAACACCAGCGCGuugcgcgaccucaucGcCGCCAUCaAGg -3' miRNA: 3'- gUUGUGGUUGCGC---------------CuGUGGUAGcUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 36131 | 0.66 | 0.757541 |
Target: 5'- gCGACGCCuuCGCGGGCGgUGgugucgCGAGc -3' miRNA: 3'- -GUUGUGGuuGCGCCUGUgGUa-----GCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 23468 | 0.66 | 0.767057 |
Target: 5'- -cACGCCGGCGUGGaacagguGCGCCGU-GGGa -3' miRNA: 3'- guUGUGGUUGCGCC-------UGUGGUAgCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 13939 | 0.66 | 0.788778 |
Target: 5'- gCAGCGCCGugGacuGGAUGCCcUCGGa- -3' miRNA: 3'- -GUUGUGGUugCg--CCUGUGGuAGCUca -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 7766 | 0.67 | 0.725069 |
Target: 5'- gCAGCACCGGCGCGaucuGCGCCggCGu-- -3' miRNA: 3'- -GUUGUGGUUGCGCc---UGUGGuaGCuca -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 23751 | 0.67 | 0.714029 |
Target: 5'- gCAGCGCC-AUGCcGGCGCCAcCGGGc -3' miRNA: 3'- -GUUGUGGuUGCGcCUGUGGUaGCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 28398 | 0.68 | 0.646412 |
Target: 5'- uCGACGCCGGCgGCGcGGCGCCAguaGAu- -3' miRNA: 3'- -GUUGUGGUUG-CGC-CUGUGGUag-CUca -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 5573 | 0.72 | 0.399521 |
Target: 5'- aCGGCGCCAACGCuGGcCGCCAcCGuGUc -3' miRNA: 3'- -GUUGUGGUUGCG-CCuGUGGUaGCuCA- -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 27167 | 0.72 | 0.448673 |
Target: 5'- -cGCGCCGcACGCGGAUGCC-UCGAc- -3' miRNA: 3'- guUGUGGU-UGCGCCUGUGGuAGCUca -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 19348 | 0.71 | 0.4903 |
Target: 5'- aGGCGCCAgGCgGCGGAauuGCCGUUGAGg -3' miRNA: 3'- gUUGUGGU-UG-CGCCUg--UGGUAGCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 619 | 0.69 | 0.56701 |
Target: 5'- cCAGCAgCGcCGUGGACACggcguccggCGUCGAGUc -3' miRNA: 3'- -GUUGUgGUuGCGCCUGUG---------GUAGCUCA- -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 28680 | 0.69 | 0.589555 |
Target: 5'- --uCGCCAGCGCGGcGCGCCAcgUCGu-- -3' miRNA: 3'- guuGUGGUUGCGCC-UGUGGU--AGCuca -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 8877 | 0.69 | 0.600889 |
Target: 5'- aCGAaGCgGGCGCGGGCAUCAUUGuGa -3' miRNA: 3'- -GUUgUGgUUGCGCCUGUGGUAGCuCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 4676 | 0.69 | 0.612253 |
Target: 5'- gGGCACCAGCGCgccGGAUAgCGcggCGAGa -3' miRNA: 3'- gUUGUGGUUGCG---CCUGUgGUa--GCUCa -5' |
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26857 | 5' | -52.9 | NC_005809.1 | + | 461 | 0.68 | 0.635024 |
Target: 5'- ---gGCCAGCuuGCGGGCGCUGUCGcGGUc -3' miRNA: 3'- guugUGGUUG--CGCCUGUGGUAGC-UCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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