Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26858 | 5' | -55.6 | NC_005809.1 | + | 1001 | 0.68 | 0.480714 |
Target: 5'- cCGCUGcCcGCGCCAcUGGCCgGGAa -3' miRNA: 3'- aGUGACuGcCGCGGUaACUGGaCCUg -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 2841 | 0.67 | 0.518852 |
Target: 5'- aCGCgcaGCGGCGCCAgcaccagcgaggGGCCUGGu- -3' miRNA: 3'- aGUGac-UGCCGCGGUaa----------CUGGACCug -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 4508 | 0.76 | 0.144128 |
Target: 5'- cUCACgGGCGGCGCCcgUgaacguggcGugCUGGGCg -3' miRNA: 3'- -AGUGaCUGCCGCGGuaA---------CugGACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 7302 | 0.68 | 0.491177 |
Target: 5'- cUCGCgGAUGGCGCCGUcgaUGGUCUGcGAa -3' miRNA: 3'- -AGUGaCUGCCGCGGUA---ACUGGAC-CUg -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 7554 | 0.75 | 0.180271 |
Target: 5'- cUCGauCUG-CGGCGCCAccGGCUUGGACa -3' miRNA: 3'- -AGU--GACuGCCGCGGUaaCUGGACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 8451 | 0.66 | 0.634165 |
Target: 5'- gCGCgaUGuCGGCGUCGaggUGGCCUGcGAUg -3' miRNA: 3'- aGUG--ACuGCCGCGGUa--ACUGGAC-CUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 9317 | 0.66 | 0.634165 |
Target: 5'- aC-CUGGCGGCGCaCGUcGGCgCggcGGGCg -3' miRNA: 3'- aGuGACUGCCGCG-GUAaCUG-Ga--CCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 10222 | 0.71 | 0.339115 |
Target: 5'- ----cGGCGGCGaCCGcagcGACCUGGGCg -3' miRNA: 3'- agugaCUGCCGC-GGUaa--CUGGACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 11836 | 0.73 | 0.256097 |
Target: 5'- -gACcGGCcGCGCCgcgGUUGGCCUGGGCg -3' miRNA: 3'- agUGaCUGcCGCGG---UAACUGGACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 13064 | 0.71 | 0.314675 |
Target: 5'- aCAgcCUGuCGuCGCCAUUGACgUGGACa -3' miRNA: 3'- aGU--GACuGCcGCGGUAACUGgACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 13467 | 0.69 | 0.44001 |
Target: 5'- -gGC--GCGGUGUCGggcaUGACCUGGGCg -3' miRNA: 3'- agUGacUGCCGCGGUa---ACUGGACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 13518 | 0.67 | 0.544931 |
Target: 5'- cCGCUGAUGGCcuacgagccGCCGguggguaucGACCUGGcCg -3' miRNA: 3'- aGUGACUGCCG---------CGGUaa-------CUGGACCuG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 14318 | 0.66 | 0.578092 |
Target: 5'- -aACUGGCGcGCGCC-UUGGCUgaacugccGGGCc -3' miRNA: 3'- agUGACUGC-CGCGGuAACUGGa-------CCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 14356 | 0.68 | 0.460124 |
Target: 5'- gCGCgugGucguCGGCGUgGccGACCUGGACa -3' miRNA: 3'- aGUGa--Cu---GCCGCGgUaaCUGGACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 15121 | 0.67 | 0.534009 |
Target: 5'- gCGCUGGCauaccaGCGCCAg-GGCCUGcGGCc -3' miRNA: 3'- aGUGACUGc-----CGCGGUaaCUGGAC-CUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 16744 | 0.66 | 0.611671 |
Target: 5'- -aACUGAcCGGCGCCAacggcGGCCcGGuGCa -3' miRNA: 3'- agUGACU-GCCGCGGUaa---CUGGaCC-UG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 16955 | 0.7 | 0.392017 |
Target: 5'- gCGCUGcUGGCGCCGcgccgccguggUUGccacuGCCUGGGCc -3' miRNA: 3'- aGUGACuGCCGCGGU-----------AAC-----UGGACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 17658 | 0.69 | 0.430143 |
Target: 5'- cCACgaucuUGAUGGCGUCGgcGGgCUGGGCg -3' miRNA: 3'- aGUG-----ACUGCCGCGGUaaCUgGACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 17881 | 0.66 | 0.622914 |
Target: 5'- gCACcGAUGGacaGCCug-GGCgUGGACg -3' miRNA: 3'- aGUGaCUGCCg--CGGuaaCUGgACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 18302 | 0.67 | 0.56698 |
Target: 5'- gUCACUGucCGGCGCCAcgcucaaggUGgcaaGCCgcgaGGACa -3' miRNA: 3'- -AGUGACu-GCCGCGGUa--------AC----UGGa---CCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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