miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26858 5' -55.6 NC_005809.1 + 4508 0.76 0.144128
Target:  5'- cUCACgGGCGGCGCCcgUgaacguggcGugCUGGGCg -3'
miRNA:   3'- -AGUGaCUGCCGCGGuaA---------CugGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 9317 0.66 0.634165
Target:  5'- aC-CUGGCGGCGCaCGUcGGCgCggcGGGCg -3'
miRNA:   3'- aGuGACUGCCGCG-GUAaCUG-Ga--CCUG- -5'
26858 5' -55.6 NC_005809.1 + 24267 0.66 0.622914
Target:  5'- cCACcuUGAgcgUGGCGCCGgacagUGACCacguggGGGCg -3'
miRNA:   3'- aGUG--ACU---GCCGCGGUa----ACUGGa-----CCUG- -5'
26858 5' -55.6 NC_005809.1 + 34677 0.66 0.622914
Target:  5'- -aGCUGGCGaucuacgcacGCGCCGc---CCUGGACg -3'
miRNA:   3'- agUGACUGC----------CGCGGUaacuGGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 37460 0.66 0.578092
Target:  5'- uUCA---ACGGCGCCAgccgcaccgGACgCUGGGCc -3'
miRNA:   3'- -AGUgacUGCCGCGGUaa-------CUG-GACCUG- -5'
26858 5' -55.6 NC_005809.1 + 14318 0.66 0.578092
Target:  5'- -aACUGGCGcGCGCC-UUGGCUgaacugccGGGCc -3'
miRNA:   3'- agUGACUGC-CGCGGuAACUGGa-------CCUG- -5'
26858 5' -55.6 NC_005809.1 + 42459 0.67 0.544931
Target:  5'- aCGCgaagugguugGACGGCGCgCAgaacGAUCUGGAa -3'
miRNA:   3'- aGUGa---------CUGCCGCG-GUaa--CUGGACCUg -5'
26858 5' -55.6 NC_005809.1 + 34384 0.67 0.512409
Target:  5'- gUCGCUGACgaacgggcaGGaCGCCAgcgccuuCCUGGGCc -3'
miRNA:   3'- -AGUGACUG---------CC-GCGGUaacu---GGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 7302 0.68 0.491177
Target:  5'- cUCGCgGAUGGCGCCGUcgaUGGUCUGcGAa -3'
miRNA:   3'- -AGUGaCUGCCGCGGUA---ACUGGAC-CUg -5'
26858 5' -55.6 NC_005809.1 + 36181 0.69 0.450005
Target:  5'- aUCACcGAgGGCGCCGcggcggccGACCUGGu- -3'
miRNA:   3'- -AGUGaCUgCCGCGGUaa------CUGGACCug -5'
26858 5' -55.6 NC_005809.1 + 39009 0.73 0.230316
Target:  5'- gUCGCUGaaauuuauGCGGCGCgGUUGGCg-GGACu -3'
miRNA:   3'- -AGUGAC--------UGCCGCGgUAACUGgaCCUG- -5'
26858 5' -55.6 NC_005809.1 + 11836 0.73 0.256097
Target:  5'- -gACcGGCcGCGCCgcgGUUGGCCUGGGCg -3'
miRNA:   3'- agUGaCUGcCGCGG---UAACUGGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 26887 0.7 0.356159
Target:  5'- -gGCUGACGGCaGUg--UGACCUuGGGCa -3'
miRNA:   3'- agUGACUGCCG-CGguaACUGGA-CCUG- -5'
26858 5' -55.6 NC_005809.1 + 27592 0.69 0.410805
Target:  5'- -aGCaGGCGGCGCCAgaUGGCgUGGuCg -3'
miRNA:   3'- agUGaCUGCCGCGGUa-ACUGgACCuG- -5'
26858 5' -55.6 NC_005809.1 + 17658 0.69 0.430143
Target:  5'- cCACgaucuUGAUGGCGUCGgcGGgCUGGGCg -3'
miRNA:   3'- aGUG-----ACUGCCGCGGUaaCUgGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 13467 0.69 0.44001
Target:  5'- -gGC--GCGGUGUCGggcaUGACCUGGGCg -3'
miRNA:   3'- agUGacUGCCGCGGUa---ACUGGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 18580 0.69 0.450005
Target:  5'- cUCGCggUGACGGCcugGCCGUccgaGACUUGGAg -3'
miRNA:   3'- -AGUG--ACUGCCG---CGGUAa---CUGGACCUg -5'
26858 5' -55.6 NC_005809.1 + 25288 0.66 0.634165
Target:  5'- gCGCccGCGGCGCCGgcuuCgUGGACg -3'
miRNA:   3'- aGUGacUGCCGCGGUaacuGgACCUG- -5'
26858 5' -55.6 NC_005809.1 + 7554 0.75 0.180271
Target:  5'- cUCGauCUG-CGGCGCCAccGGCUUGGACa -3'
miRNA:   3'- -AGU--GACuGCCGCGGUaaCUGGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 13064 0.71 0.314675
Target:  5'- aCAgcCUGuCGuCGCCAUUGACgUGGACa -3'
miRNA:   3'- aGU--GACuGCcGCGGUAACUGgACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.