miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26858 5' -55.6 NC_005809.1 + 10222 0.71 0.339115
Target:  5'- ----cGGCGGCGaCCGcagcGACCUGGGCg -3'
miRNA:   3'- agugaCUGCCGC-GGUaa--CUGGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 15121 0.67 0.534009
Target:  5'- gCGCUGGCauaccaGCGCCAg-GGCCUGcGGCc -3'
miRNA:   3'- aGUGACUGc-----CGCGGUaaCUGGAC-CUG- -5'
26858 5' -55.6 NC_005809.1 + 18302 0.67 0.56698
Target:  5'- gUCACUGucCGGCGCCAcgcucaaggUGgcaaGCCgcgaGGACa -3'
miRNA:   3'- -AGUGACu-GCCGCGGUa--------AC----UGGa---CCUG- -5'
26858 5' -55.6 NC_005809.1 + 25288 0.66 0.634165
Target:  5'- gCGCccGCGGCGCCGgcuuCgUGGACg -3'
miRNA:   3'- aGUGacUGCCGCGGUaacuGgACCUG- -5'
26858 5' -55.6 NC_005809.1 + 25141 0.68 0.456062
Target:  5'- -uGCUGGCGGgGCCAcugcucaagggcGACgUGGGCg -3'
miRNA:   3'- agUGACUGCCgCGGUaa----------CUGgACCUG- -5'
26858 5' -55.6 NC_005809.1 + 14356 0.68 0.460124
Target:  5'- gCGCgugGucguCGGCGUgGccGACCUGGACa -3'
miRNA:   3'- aGUGa--Cu---GCCGCGgUaaCUGGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 27012 1.11 0.000466
Target:  5'- gUCACUGACGGCGCCAUUGACCUGGACg -3'
miRNA:   3'- -AGUGACUGCCGCGGUAACUGGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 7554 0.75 0.180271
Target:  5'- cUCGauCUG-CGGCGCCAccGGCUUGGACa -3'
miRNA:   3'- -AGU--GACuGCCGCGGUaaCUGGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 13064 0.71 0.314675
Target:  5'- aCAgcCUGuCGuCGCCAUUGACgUGGACa -3'
miRNA:   3'- aGU--GACuGCcGCGGUAACUGgACCUG- -5'
26858 5' -55.6 NC_005809.1 + 35386 0.67 0.532921
Target:  5'- gCGCUGucccggcugcgucAgGGCGUCAgcgcgucgGGCCUGGGCu -3'
miRNA:   3'- aGUGAC-------------UgCCGCGGUaa------CUGGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 27734 0.68 0.501743
Target:  5'- gCGCUGGC--CGCCAacggcaucGACCUGGGCg -3'
miRNA:   3'- aGUGACUGccGCGGUaa------CUGGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 30517 0.68 0.501743
Target:  5'- aCACcauCGGCGCCAUcGACUucgacacgcUGGGCa -3'
miRNA:   3'- aGUGacuGCCGCGGUAaCUGG---------ACCUG- -5'
26858 5' -55.6 NC_005809.1 + 16955 0.7 0.392017
Target:  5'- gCGCUGcUGGCGCCGcgccgccguggUUGccacuGCCUGGGCc -3'
miRNA:   3'- aGUGACuGCCGCGGU-----------AAC-----UGGACCUG- -5'
26858 5' -55.6 NC_005809.1 + 40432 0.67 0.512409
Target:  5'- gUAC-GGCGGCGCgGUUGACC-GGcuGCu -3'
miRNA:   3'- aGUGaCUGCCGCGgUAACUGGaCC--UG- -5'
26858 5' -55.6 NC_005809.1 + 28035 0.7 0.392017
Target:  5'- gUCGCUGuugucCGGCGCCGgcGACgUGG-Cu -3'
miRNA:   3'- -AGUGACu----GCCGCGGUaaCUGgACCuG- -5'
26858 5' -55.6 NC_005809.1 + 1001 0.68 0.480714
Target:  5'- cCGCUGcCcGCGCCAcUGGCCgGGAa -3'
miRNA:   3'- aGUGACuGcCGCGGUaACUGGaCCUg -5'
26858 5' -55.6 NC_005809.1 + 2841 0.67 0.518852
Target:  5'- aCGCgcaGCGGCGCCAgcaccagcgaggGGCCUGGu- -3'
miRNA:   3'- aGUGac-UGCCGCGGUaa----------CUGGACCug -5'
26858 5' -55.6 NC_005809.1 + 13518 0.67 0.544931
Target:  5'- cCGCUGAUGGCcuacgagccGCCGguggguaucGACCUGGcCg -3'
miRNA:   3'- aGUGACUGCCG---------CGGUaa-------CUGGACCuG- -5'
26858 5' -55.6 NC_005809.1 + 20314 0.69 0.450005
Target:  5'- uUCGCUGACGGCcggcgaauacGCCAUcgcGGCCgacaaccaGGGCc -3'
miRNA:   3'- -AGUGACUGCCG----------CGGUAa--CUGGa-------CCUG- -5'
26858 5' -55.6 NC_005809.1 + 30974 0.68 0.469333
Target:  5'- gCACUGcugcccgGCGGCcaGCCGgcGGcCCUGGGCg -3'
miRNA:   3'- aGUGAC-------UGCCG--CGGUaaCU-GGACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.