Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26858 | 5' | -55.6 | NC_005809.1 | + | 42459 | 0.67 | 0.544931 |
Target: 5'- aCGCgaagugguugGACGGCGCgCAgaacGAUCUGGAa -3' miRNA: 3'- aGUGa---------CUGCCGCG-GUaa--CUGGACCUg -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 40432 | 0.67 | 0.512409 |
Target: 5'- gUAC-GGCGGCGCgGUUGACC-GGcuGCu -3' miRNA: 3'- aGUGaCUGCCGCGgUAACUGGaCC--UG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 39009 | 0.73 | 0.230316 |
Target: 5'- gUCGCUGaaauuuauGCGGCGCgGUUGGCg-GGACu -3' miRNA: 3'- -AGUGAC--------UGCCGCGgUAACUGgaCCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 37460 | 0.66 | 0.578092 |
Target: 5'- uUCA---ACGGCGCCAgccgcaccgGACgCUGGGCc -3' miRNA: 3'- -AGUgacUGCCGCGGUaa-------CUG-GACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 36181 | 0.69 | 0.450005 |
Target: 5'- aUCACcGAgGGCGCCGcggcggccGACCUGGu- -3' miRNA: 3'- -AGUGaCUgCCGCGGUaa------CUGGACCug -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 35386 | 0.67 | 0.532921 |
Target: 5'- gCGCUGucccggcugcgucAgGGCGUCAgcgcgucgGGCCUGGGCu -3' miRNA: 3'- aGUGAC-------------UgCCGCGGUaa------CUGGACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 34677 | 0.66 | 0.622914 |
Target: 5'- -aGCUGGCGaucuacgcacGCGCCGc---CCUGGACg -3' miRNA: 3'- agUGACUGC----------CGCGGUaacuGGACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 34384 | 0.67 | 0.512409 |
Target: 5'- gUCGCUGACgaacgggcaGGaCGCCAgcgccuuCCUGGGCc -3' miRNA: 3'- -AGUGACUG---------CC-GCGGUaacu---GGACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 30974 | 0.68 | 0.469333 |
Target: 5'- gCACUGcugcccgGCGGCcaGCCGgcGGcCCUGGGCg -3' miRNA: 3'- aGUGAC-------UGCCG--CGGUaaCU-GGACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 30517 | 0.68 | 0.501743 |
Target: 5'- aCACcauCGGCGCCAUcGACUucgacacgcUGGGCa -3' miRNA: 3'- aGUGacuGCCGCGGUAaCUGG---------ACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 28035 | 0.7 | 0.392017 |
Target: 5'- gUCGCUGuugucCGGCGCCGgcGACgUGG-Cu -3' miRNA: 3'- -AGUGACu----GCCGCGGUaaCUGgACCuG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 27734 | 0.68 | 0.501743 |
Target: 5'- gCGCUGGC--CGCCAacggcaucGACCUGGGCg -3' miRNA: 3'- aGUGACUGccGCGGUaa------CUGGACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 27592 | 0.69 | 0.410805 |
Target: 5'- -aGCaGGCGGCGCCAgaUGGCgUGGuCg -3' miRNA: 3'- agUGaCUGCCGCGGUa-ACUGgACCuG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 27012 | 1.11 | 0.000466 |
Target: 5'- gUCACUGACGGCGCCAUUGACCUGGACg -3' miRNA: 3'- -AGUGACUGCCGCGGUAACUGGACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 26887 | 0.7 | 0.356159 |
Target: 5'- -gGCUGACGGCaGUg--UGACCUuGGGCa -3' miRNA: 3'- agUGACUGCCG-CGguaACUGGA-CCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 25288 | 0.66 | 0.634165 |
Target: 5'- gCGCccGCGGCGCCGgcuuCgUGGACg -3' miRNA: 3'- aGUGacUGCCGCGGUaacuGgACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 25141 | 0.68 | 0.456062 |
Target: 5'- -uGCUGGCGGgGCCAcugcucaagggcGACgUGGGCg -3' miRNA: 3'- agUGACUGCCgCGGUaa----------CUGgACCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 24267 | 0.66 | 0.622914 |
Target: 5'- cCACcuUGAgcgUGGCGCCGgacagUGACCacguggGGGCg -3' miRNA: 3'- aGUG--ACU---GCCGCGGUa----ACUGGa-----CCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 20314 | 0.69 | 0.450005 |
Target: 5'- uUCGCUGACGGCcggcgaauacGCCAUcgcGGCCgacaaccaGGGCc -3' miRNA: 3'- -AGUGACUGCCG----------CGGUAa--CUGGa-------CCUG- -5' |
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26858 | 5' | -55.6 | NC_005809.1 | + | 19472 | 0.71 | 0.339115 |
Target: 5'- gUCGCcGugGGCGCCGccgUUGGCgucgGGGCg -3' miRNA: 3'- -AGUGaCugCCGCGGU---AACUGga--CCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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