miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26861 3' -54.5 NC_005809.1 + 1095 0.66 0.710416
Target:  5'- --uUGCC-UUgGCCGUGUCGcGCgGCa -3'
miRNA:   3'- guuGCGGuAGgCGGUAUAGCaCGgCG- -5'
26861 3' -54.5 NC_005809.1 + 12597 0.66 0.710416
Target:  5'- uCGACGgcugCAUCCagGCCGUcgUGcGCCGCg -3'
miRNA:   3'- -GUUGCg---GUAGG--CGGUAuaGCaCGGCG- -5'
26861 3' -54.5 NC_005809.1 + 38399 0.66 0.710416
Target:  5'- --cCGCCAUCgaggcgGCCGgcuaccagAUCGUGCUGUc -3'
miRNA:   3'- guuGCGGUAGg-----CGGUa-------UAGCACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 16202 0.66 0.710416
Target:  5'- -cGCGCCAUUCGCCcgAagaCGUGagcaGCa -3'
miRNA:   3'- guUGCGGUAGGCGGuaUa--GCACgg--CG- -5'
26861 3' -54.5 NC_005809.1 + 8741 0.66 0.710416
Target:  5'- gGACaCCAgggCgCGCgCGUAUucaCGUGCCGCu -3'
miRNA:   3'- gUUGcGGUa--G-GCG-GUAUA---GCACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 26245 0.66 0.699392
Target:  5'- aGugGCaccgaAUCgGCCAUGUCGUaCuCGCu -3'
miRNA:   3'- gUugCGg----UAGgCGGUAUAGCAcG-GCG- -5'
26861 3' -54.5 NC_005809.1 + 9053 0.66 0.699392
Target:  5'- gGugGCCGUgCCguaauuGCCAgcgGUggcCGUGCCGUa -3'
miRNA:   3'- gUugCGGUA-GG------CGGUa--UA---GCACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 29274 0.66 0.699392
Target:  5'- aCAACGCCggCC-CCGg--CGcGCUGCa -3'
miRNA:   3'- -GUUGCGGuaGGcGGUauaGCaCGGCG- -5'
26861 3' -54.5 NC_005809.1 + 8934 0.66 0.699392
Target:  5'- gGugGCCGUgCCguaauuGCCAgcgGUggcCGUGCCGUa -3'
miRNA:   3'- gUugCGGUA-GG------CGGUa--UA---GCACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 17623 0.66 0.699392
Target:  5'- ---gGCCucgauGUuuGCCGcAUCGUGCgGCa -3'
miRNA:   3'- guugCGG-----UAggCGGUaUAGCACGgCG- -5'
26861 3' -54.5 NC_005809.1 + 4270 0.66 0.699392
Target:  5'- uCAGCGCCGgcauggugaUgGCCGUGUCG-GCgGUg -3'
miRNA:   3'- -GUUGCGGUa--------GgCGGUAUAGCaCGgCG- -5'
26861 3' -54.5 NC_005809.1 + 15132 0.66 0.699392
Target:  5'- cCAGCGCCAgg-GCCug--CG-GCCGCc -3'
miRNA:   3'- -GUUGCGGUaggCGGuauaGCaCGGCG- -5'
26861 3' -54.5 NC_005809.1 + 34842 0.66 0.699392
Target:  5'- aCAGCaaGCCggCCGCCGag-CGUgcGCUGCa -3'
miRNA:   3'- -GUUG--CGGuaGGCGGUauaGCA--CGGCG- -5'
26861 3' -54.5 NC_005809.1 + 11980 0.66 0.694963
Target:  5'- cCGAUGCCA-CCGaCGUAUCccagcccaccaucUGCCGCa -3'
miRNA:   3'- -GUUGCGGUaGGCgGUAUAGc------------ACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 27828 0.66 0.688301
Target:  5'- -cGCGCUGcCCGCgGUggCGccgGCCGCg -3'
miRNA:   3'- guUGCGGUaGGCGgUAuaGCa--CGGCG- -5'
26861 3' -54.5 NC_005809.1 + 21734 0.66 0.688301
Target:  5'- gGAUGCCA-CCGUUGgg-CGcgGCCGCg -3'
miRNA:   3'- gUUGCGGUaGGCGGUauaGCa-CGGCG- -5'
26861 3' -54.5 NC_005809.1 + 25323 0.66 0.688301
Target:  5'- cCGGCGCUcgUCGCCGggAUUGUccagGCCGg -3'
miRNA:   3'- -GUUGCGGuaGGCGGUa-UAGCA----CGGCg -5'
26861 3' -54.5 NC_005809.1 + 4441 0.66 0.688301
Target:  5'- ---gGCCGcaacaCCGCCAgg-CGUGCgGCu -3'
miRNA:   3'- guugCGGUa----GGCGGUauaGCACGgCG- -5'
26861 3' -54.5 NC_005809.1 + 2452 0.66 0.688301
Target:  5'- uCGGCGCCAcgaugUUGCaCAaggCGUGCUGCa -3'
miRNA:   3'- -GUUGCGGUa----GGCG-GUauaGCACGGCG- -5'
26861 3' -54.5 NC_005809.1 + 7972 0.66 0.688301
Target:  5'- uCGGCGCgCAUCgGguuuCCAUGUC--GCCGCg -3'
miRNA:   3'- -GUUGCG-GUAGgC----GGUAUAGcaCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.