miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26865 5' -61.6 NC_005809.1 + 1916 0.66 0.326461
Target:  5'- aGGACuUGCGCagcaGCUugUGGGUG-GGCCAu -3'
miRNA:   3'- aCUUG-ACGCGg---CGG--ACCCGCgCUGGU- -5'
26865 5' -61.6 NC_005809.1 + 15939 0.66 0.326461
Target:  5'- cGAuagGCUGCGgCGCCUucGCGUaGGCCAg -3'
miRNA:   3'- aCU---UGACGCgGCGGAccCGCG-CUGGU- -5'
26865 5' -61.6 NC_005809.1 + 14441 0.66 0.318691
Target:  5'- -aAGCUGCuGCCGCCcgaccaGGcguaccGCGUGACCAc -3'
miRNA:   3'- acUUGACG-CGGCGGa-----CC------CGCGCUGGU- -5'
26865 5' -61.6 NC_005809.1 + 20757 0.66 0.318691
Target:  5'- aGAggcGCUGCGCCGCgCUcgacucaucGCGCGGCUg -3'
miRNA:   3'- aCU---UGACGCGGCG-GAcc-------CGCGCUGGu -5'
26865 5' -61.6 NC_005809.1 + 16787 0.66 0.318691
Target:  5'- cGAGC-GCGCCGCgCgcauCGCGGCCAu -3'
miRNA:   3'- aCUUGaCGCGGCG-GacccGCGCUGGU- -5'
26865 5' -61.6 NC_005809.1 + 34346 0.66 0.318691
Target:  5'- -aAGCUGCugacgGCCGCCgaccaGCGCGACUAc -3'
miRNA:   3'- acUUGACG-----CGGCGGacc--CGCGCUGGU- -5'
26865 5' -61.6 NC_005809.1 + 11267 0.66 0.311061
Target:  5'- uUGcGCUGCGgCG-CUGGGaCGCucGGCCAg -3'
miRNA:   3'- -ACuUGACGCgGCgGACCC-GCG--CUGGU- -5'
26865 5' -61.6 NC_005809.1 + 27838 0.66 0.311061
Target:  5'- --uGCUGCGCguacUGCCUGGG-GCuACCGg -3'
miRNA:   3'- acuUGACGCG----GCGGACCCgCGcUGGU- -5'
26865 5' -61.6 NC_005809.1 + 13148 0.66 0.308799
Target:  5'- cUGcAACUGCGCCucgaugucgGCCagugucggccgcgcUGGGCGCccuuGGCCGg -3'
miRNA:   3'- -AC-UUGACGCGG---------CGG--------------ACCCGCG----CUGGU- -5'
26865 5' -61.6 NC_005809.1 + 39737 0.66 0.303571
Target:  5'- gGuGCUgGCGCCGCUgc-GCGUGGCCGc -3'
miRNA:   3'- aCuUGA-CGCGGCGGaccCGCGCUGGU- -5'
26865 5' -61.6 NC_005809.1 + 19457 0.66 0.303571
Target:  5'- gGAGCcguuaccGCuGUCGCCgUGGGCGCcGCCGu -3'
miRNA:   3'- aCUUGa------CG-CGGCGG-ACCCGCGcUGGU- -5'
26865 5' -61.6 NC_005809.1 + 38118 0.66 0.29622
Target:  5'- gGAACUGgaagaagcCGCaCGCCUGGcGguguUGCGGCCGg -3'
miRNA:   3'- aCUUGAC--------GCG-GCGGACC-C----GCGCUGGU- -5'
26865 5' -61.6 NC_005809.1 + 17289 0.66 0.29622
Target:  5'- cGaAGCcgGCGCCGC--GGGCGCGcauCCAu -3'
miRNA:   3'- aC-UUGa-CGCGGCGgaCCCGCGCu--GGU- -5'
26865 5' -61.6 NC_005809.1 + 13103 0.67 0.289723
Target:  5'- gGAACUGgccgcgcgcuucguCGCCuggugccaggagcaCCUGGGCGCGACg- -3'
miRNA:   3'- aCUUGAC--------------GCGGc-------------GGACCCGCGCUGgu -5'
26865 5' -61.6 NC_005809.1 + 37575 0.67 0.284748
Target:  5'- cGGACUGCGCCGaCCUGcuguuCGCcaacgucauggaacuGACCAg -3'
miRNA:   3'- aCUUGACGCGGC-GGACcc---GCG---------------CUGGU- -5'
26865 5' -61.6 NC_005809.1 + 10801 0.67 0.281935
Target:  5'- aUGuACUGCuG-CGCCUcGGCGCGGCUg -3'
miRNA:   3'- -ACuUGACG-CgGCGGAcCCGCGCUGGu -5'
26865 5' -61.6 NC_005809.1 + 15306 0.67 0.27984
Target:  5'- cGAACUGCgguucauugccucgGCCaagaGCCUgGGGCGcCGGCUg -3'
miRNA:   3'- aCUUGACG--------------CGG----CGGA-CCCGC-GCUGGu -5'
26865 5' -61.6 NC_005809.1 + 13540 0.67 0.275
Target:  5'- cGAACUGUcgGCCGCCUGacucGGUGC--CCAc -3'
miRNA:   3'- aCUUGACG--CGGCGGAC----CCGCGcuGGU- -5'
26865 5' -61.6 NC_005809.1 + 16963 0.67 0.270905
Target:  5'- gGcGCcGCGCCGCCgugguugccacugccUGGGCcGCaGACCGc -3'
miRNA:   3'- aCuUGaCGCGGCGG---------------ACCCG-CG-CUGGU- -5'
26865 5' -61.6 NC_005809.1 + 16450 0.67 0.268202
Target:  5'- uUGAACacgGCGUCGUagaucggGGGCGUGACgGa -3'
miRNA:   3'- -ACUUGa--CGCGGCGga-----CCCGCGCUGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.