Results 1 - 20 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 22743 | 1.09 | 0.00092 |
Target: 5'- gAACAAAACCGGCCUGGGCAAUCACCCc -3' miRNA: 3'- -UUGUUUUGGCCGGACCCGUUAGUGGG- -5' |
|||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 16416 | 0.77 | 0.169924 |
Target: 5'- -gUAGGACaCGGCCgcgGGGUAAUCGCCg -3' miRNA: 3'- uuGUUUUG-GCCGGa--CCCGUUAGUGGg -5' |
|||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 11831 | 0.77 | 0.171865 |
Target: 5'- gAACAGAccggccgcgccgcgGuuGGCCUGGGCGAaccccgcgccaauaUCGCCCa -3' miRNA: 3'- -UUGUUU--------------UggCCGGACCCGUU--------------AGUGGG- -5' |
|||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 25361 | 0.77 | 0.179829 |
Target: 5'- cGCAuAGCCGGCCaccGGGCAggCGCCa -3' miRNA: 3'- uUGUuUUGGCCGGa--CCCGUuaGUGGg -5' |
|||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 17287 | 0.77 | 0.190244 |
Target: 5'- cACGAAGCCGGCgCcgcGGGCGcgCAUCCa -3' miRNA: 3'- uUGUUUUGGCCG-Ga--CCCGUuaGUGGG- -5' |
|||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 34930 | 0.76 | 0.195647 |
Target: 5'- cGCAagGAGCCGGCgUGGGuCGAgccgCGCCCc -3' miRNA: 3'- uUGU--UUUGGCCGgACCC-GUUa---GUGGG- -5' |
|||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 14053 | 0.75 | 0.243852 |
Target: 5'- cGCGAAAgcCCGGCgCUGGGCGucGUUGCCUa -3' miRNA: 3'- uUGUUUU--GGCCG-GACCCGU--UAGUGGG- -5' |
|||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 17233 | 0.74 | 0.293779 |
Target: 5'- uGCGAAcugGCCGGCCUGGaCAAUC-CCg -3' miRNA: 3'- uUGUUU---UGGCCGGACCcGUUAGuGGg -5' |
|||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 688 | 0.73 | 0.317501 |
Target: 5'- cGGCGGcGCCGGCC-GGGC---CGCCCa -3' miRNA: 3'- -UUGUUuUGGCCGGaCCCGuuaGUGGG- -5' |
|||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 6392 | 0.73 | 0.334101 |
Target: 5'- cGCAGgccGGCCGGCCcGGuGUAGUCgcgGCCCa -3' miRNA: 3'- uUGUU---UUGGCCGGaCC-CGUUAG---UGGG- -5' |
|||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 18062 | 0.72 | 0.342637 |
Target: 5'- gGACGuGAUCGGCgUGGGCGccaGCCCc -3' miRNA: 3'- -UUGUuUUGGCCGgACCCGUuagUGGG- -5' |
|||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 31022 | 0.71 | 0.387636 |
Target: 5'- gGGCuu-GCCGGCC-GaGGCAAUCGCgCg -3' miRNA: 3'- -UUGuuuUGGCCGGaC-CCGUUAGUGgG- -5' |
|||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 16070 | 0.71 | 0.387636 |
Target: 5'- gAAUGAuGCCGGCUUGcgagucGGCGAggaUCACCCg -3' miRNA: 3'- -UUGUUuUGGCCGGAC------CCGUU---AGUGGG- -5' |
|||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 9097 | 0.71 | 0.416437 |
Target: 5'- cGCGAGGCCGuucuuGCCggUGGGCAgguAUCGCCa -3' miRNA: 3'- uUGUUUUGGC-----CGG--ACCCGU---UAGUGGg -5' |
|||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 19792 | 0.71 | 0.426325 |
Target: 5'- uGCcAGGCCGGCCcGGuaGAaCACCCg -3' miRNA: 3'- uUGuUUUGGCCGGaCCcgUUaGUGGG- -5' |
|||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 41855 | 0.7 | 0.44651 |
Target: 5'- cGGCAAAGCCGccccuauCCUGGGCGGUaucuugggcgGCCCg -3' miRNA: 3'- -UUGUUUUGGCc------GGACCCGUUAg---------UGGG- -5' |
|||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 22789 | 0.7 | 0.456801 |
Target: 5'- uACcGGGCCGGCCU-GGCAAUCAgUg -3' miRNA: 3'- uUGuUUUGGCCGGAcCCGUUAGUgGg -5' |
|||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 2361 | 0.7 | 0.456801 |
Target: 5'- cGCAAu-UCGGCCUGcacguGGCAGaCGCCCg -3' miRNA: 3'- uUGUUuuGGCCGGAC-----CCGUUaGUGGG- -5' |
|||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 40149 | 0.7 | 0.467217 |
Target: 5'- -uCGAGGCCGGCCUGcuGCcGUaCACCUa -3' miRNA: 3'- uuGUUUUGGCCGGACc-CGuUA-GUGGG- -5' |
|||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 22479 | 0.7 | 0.477754 |
Target: 5'- aGGCGGAACCaggggcGGgCUGGGCuGGUCauGCCCg -3' miRNA: 3'- -UUGUUUUGG------CCgGACCCG-UUAG--UGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home