Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26874 | 3' | -53.5 | NC_005809.1 | + | 688 | 0.73 | 0.317501 |
Target: 5'- cGGCGGcGCCGGCC-GGGC---CGCCCa -3' miRNA: 3'- -UUGUUuUGGCCGGaCCCGuuaGUGGG- -5' |
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26874 | 3' | -53.5 | NC_005809.1 | + | 1555 | 0.66 | 0.691473 |
Target: 5'- gAAUucGACCGGCUggaUGGGCA--UAUCCu -3' miRNA: 3'- -UUGuuUUGGCCGG---ACCCGUuaGUGGG- -5' |
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26874 | 3' | -53.5 | NC_005809.1 | + | 2043 | 0.69 | 0.543201 |
Target: 5'- cGAUAGAACaCGGCgCgcaauuccucgGGGUcGUCGCCCa -3' miRNA: 3'- -UUGUUUUG-GCCG-Ga----------CCCGuUAGUGGG- -5' |
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26874 | 3' | -53.5 | NC_005809.1 | + | 2361 | 0.7 | 0.456801 |
Target: 5'- cGCAAu-UCGGCCUGcacguGGCAGaCGCCCg -3' miRNA: 3'- uUGUUuuGGCCGGAC-----CCGUUaGUGGG- -5' |
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26874 | 3' | -53.5 | NC_005809.1 | + | 4036 | 0.67 | 0.657253 |
Target: 5'- -uCAAAGCCGGCCgcggcgaGcGGCAGgccagCgGCCCa -3' miRNA: 3'- uuGUUUUGGCCGGa------C-CCGUUa----G-UGGG- -5' |
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26874 | 3' | -53.5 | NC_005809.1 | + | 4092 | 0.67 | 0.622803 |
Target: 5'- ---cAGGCCGGCCaggUGGGCGG-CGCUg -3' miRNA: 3'- uuguUUUGGCCGG---ACCCGUUaGUGGg -5' |
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26874 | 3' | -53.5 | NC_005809.1 | + | 5524 | 0.67 | 0.64578 |
Target: 5'- gGACAc-GCCGGCCgcccaGGUuccgcccaGGUCGCCCg -3' miRNA: 3'- -UUGUuuUGGCCGGac---CCG--------UUAGUGGG- -5' |
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26874 | 3' | -53.5 | NC_005809.1 | + | 6264 | 0.66 | 0.702772 |
Target: 5'- uGCGGuugauCUGcGCgCUGGGCAggccgaacagGUCGCCCa -3' miRNA: 3'- uUGUUuu---GGC-CG-GACCCGU----------UAGUGGG- -5' |
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26874 | 3' | -53.5 | NC_005809.1 | + | 6392 | 0.73 | 0.334101 |
Target: 5'- cGCAGgccGGCCGGCCcGGuGUAGUCgcgGCCCa -3' miRNA: 3'- uUGUU---UUGGCCGGaCC-CGUUAG---UGGG- -5' |
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26874 | 3' | -53.5 | NC_005809.1 | + | 9097 | 0.71 | 0.416437 |
Target: 5'- cGCGAGGCCGuucuuGCCggUGGGCAgguAUCGCCa -3' miRNA: 3'- uUGUUUUGGC-----CGG--ACCCGU---UAGUGGg -5' |
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26874 | 3' | -53.5 | NC_005809.1 | + | 11831 | 0.77 | 0.171865 |
Target: 5'- gAACAGAccggccgcgccgcgGuuGGCCUGGGCGAaccccgcgccaauaUCGCCCa -3' miRNA: 3'- -UUGUUU--------------UggCCGGACCCGUU--------------AGUGGG- -5' |
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26874 | 3' | -53.5 | NC_005809.1 | + | 12192 | 0.66 | 0.680112 |
Target: 5'- gAACGAAACCGGCCcGcGCugccuGCCCc -3' miRNA: 3'- -UUGUUUUGGCCGGaCcCGuuag-UGGG- -5' |
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26874 | 3' | -53.5 | NC_005809.1 | + | 12905 | 0.67 | 0.622803 |
Target: 5'- cACAcgGCCGcGCCcugcUGGGCAacggcuaccucAUCAUCCc -3' miRNA: 3'- uUGUuuUGGC-CGG----ACCCGU-----------UAGUGGG- -5' |
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26874 | 3' | -53.5 | NC_005809.1 | + | 13100 | 0.68 | 0.577041 |
Target: 5'- cGCGGAACUGGCCgc-GCGcuucGUCGCCUg -3' miRNA: 3'- uUGUUUUGGCCGGaccCGU----UAGUGGG- -5' |
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26874 | 3' | -53.5 | NC_005809.1 | + | 13946 | 0.67 | 0.657253 |
Target: 5'- cGCGGAACUGGCC--GGCc-UCAUCCg -3' miRNA: 3'- uUGUUUUGGCCGGacCCGuuAGUGGG- -5' |
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26874 | 3' | -53.5 | NC_005809.1 | + | 14053 | 0.75 | 0.243852 |
Target: 5'- cGCGAAAgcCCGGCgCUGGGCGucGUUGCCUa -3' miRNA: 3'- uUGUUUU--GGCCG-GACCCGU--UAGUGGG- -5' |
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26874 | 3' | -53.5 | NC_005809.1 | + | 14324 | 0.66 | 0.713996 |
Target: 5'- cGCAAcauGgUGaGCCUGGcGCAGUCcgACCCg -3' miRNA: 3'- uUGUUu--UgGC-CGGACC-CGUUAG--UGGG- -5' |
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26874 | 3' | -53.5 | NC_005809.1 | + | 16070 | 0.71 | 0.387636 |
Target: 5'- gAAUGAuGCCGGCUUGcgagucGGCGAggaUCACCCg -3' miRNA: 3'- -UUGUUuUGGCCGGAC------CCGUU---AGUGGG- -5' |
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26874 | 3' | -53.5 | NC_005809.1 | + | 16416 | 0.77 | 0.169924 |
Target: 5'- -gUAGGACaCGGCCgcgGGGUAAUCGCCg -3' miRNA: 3'- uuGUUUUG-GCCGGa--CCCGUUAGUGGg -5' |
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26874 | 3' | -53.5 | NC_005809.1 | + | 17233 | 0.74 | 0.293779 |
Target: 5'- uGCGAAcugGCCGGCCUGGaCAAUC-CCg -3' miRNA: 3'- uUGUUU---UGGCCGGACCcGUUAGuGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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