miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26874 3' -53.5 NC_005809.1 + 36402 0.66 0.702772
Target:  5'- cGGCAAGACCGGCCUGcGCugggaaGAUgACg- -3'
miRNA:   3'- -UUGUUUUGGCCGGACcCG------UUAgUGgg -5'
26874 3' -53.5 NC_005809.1 + 2043 0.69 0.543201
Target:  5'- cGAUAGAACaCGGCgCgcaauuccucgGGGUcGUCGCCCa -3'
miRNA:   3'- -UUGUUUUG-GCCG-Ga----------CCCGuUAGUGGG- -5'
26874 3' -53.5 NC_005809.1 + 24570 0.68 0.588431
Target:  5'- uGGCGAGGCCGGCCacggucGGGCcGUCcggcguguccuuGCCg -3'
miRNA:   3'- -UUGUUUUGGCCGGa-----CCCGuUAG------------UGGg -5'
26874 3' -53.5 NC_005809.1 + 38491 0.67 0.634293
Target:  5'- cACcuGGCCGGCCUGauGGCuaccAAUCcCCCc -3'
miRNA:   3'- uUGuuUUGGCCGGAC--CCG----UUAGuGGG- -5'
26874 3' -53.5 NC_005809.1 + 5524 0.67 0.64578
Target:  5'- gGACAc-GCCGGCCgcccaGGUuccgcccaGGUCGCCCg -3'
miRNA:   3'- -UUGUuuUGGCCGGac---CCG--------UUAGUGGG- -5'
26874 3' -53.5 NC_005809.1 + 26262 0.67 0.64578
Target:  5'- gGGCAcccGCCGGCCUGGuCGGcUCGCgCa -3'
miRNA:   3'- -UUGUuu-UGGCCGGACCcGUU-AGUGgG- -5'
26874 3' -53.5 NC_005809.1 + 12192 0.66 0.680112
Target:  5'- gAACGAAACCGGCCcGcGCugccuGCCCc -3'
miRNA:   3'- -UUGUUUUGGCCGGaCcCGuuag-UGGG- -5'
26874 3' -53.5 NC_005809.1 + 39644 0.66 0.69939
Target:  5'- cGACGcgguguGGGCCGGCaugggaaUGGGCAAgacgguuuccgcgcUCACCg -3'
miRNA:   3'- -UUGU------UUUGGCCGg------ACCCGUU--------------AGUGGg -5'
26874 3' -53.5 NC_005809.1 + 6264 0.66 0.702772
Target:  5'- uGCGGuugauCUGcGCgCUGGGCAggccgaacagGUCGCCCa -3'
miRNA:   3'- uUGUUuu---GGC-CG-GACCCGU----------UAGUGGG- -5'
26874 3' -53.5 NC_005809.1 + 22479 0.7 0.477754
Target:  5'- aGGCGGAACCaggggcGGgCUGGGCuGGUCauGCCCg -3'
miRNA:   3'- -UUGUUUUGG------CCgGACCCG-UUAG--UGGG- -5'
26874 3' -53.5 NC_005809.1 + 2361 0.7 0.456801
Target:  5'- cGCAAu-UCGGCCUGcacguGGCAGaCGCCCg -3'
miRNA:   3'- uUGUUuuGGCCGGAC-----CCGUUaGUGGG- -5'
26874 3' -53.5 NC_005809.1 + 19792 0.71 0.426325
Target:  5'- uGCcAGGCCGGCCcGGuaGAaCACCCg -3'
miRNA:   3'- uUGuUUUGGCCGGaCCcgUUaGUGGG- -5'
26874 3' -53.5 NC_005809.1 + 11831 0.77 0.171865
Target:  5'- gAACAGAccggccgcgccgcgGuuGGCCUGGGCGAaccccgcgccaauaUCGCCCa -3'
miRNA:   3'- -UUGUUU--------------UggCCGGACCCGUU--------------AGUGGG- -5'
26874 3' -53.5 NC_005809.1 + 25361 0.77 0.179829
Target:  5'- cGCAuAGCCGGCCaccGGGCAggCGCCa -3'
miRNA:   3'- uUGUuUUGGCCGGa--CCCGUuaGUGGg -5'
26874 3' -53.5 NC_005809.1 + 17287 0.77 0.190244
Target:  5'- cACGAAGCCGGCgCcgcGGGCGcgCAUCCa -3'
miRNA:   3'- uUGUUUUGGCCG-Ga--CCCGUuaGUGGG- -5'
26874 3' -53.5 NC_005809.1 + 14053 0.75 0.243852
Target:  5'- cGCGAAAgcCCGGCgCUGGGCGucGUUGCCUa -3'
miRNA:   3'- uUGUUUU--GGCCG-GACCCGU--UAGUGGG- -5'
26874 3' -53.5 NC_005809.1 + 688 0.73 0.317501
Target:  5'- cGGCGGcGCCGGCC-GGGC---CGCCCa -3'
miRNA:   3'- -UUGUUuUGGCCGGaCCCGuuaGUGGG- -5'
26874 3' -53.5 NC_005809.1 + 6392 0.73 0.334101
Target:  5'- cGCAGgccGGCCGGCCcGGuGUAGUCgcgGCCCa -3'
miRNA:   3'- uUGUU---UUGGCCGGaCC-CGUUAG---UGGG- -5'
26874 3' -53.5 NC_005809.1 + 31022 0.71 0.387636
Target:  5'- gGGCuu-GCCGGCC-GaGGCAAUCGCgCg -3'
miRNA:   3'- -UUGuuuUGGCCGGaC-CCGUUAGUGgG- -5'
26874 3' -53.5 NC_005809.1 + 9097 0.71 0.416437
Target:  5'- cGCGAGGCCGuucuuGCCggUGGGCAgguAUCGCCa -3'
miRNA:   3'- uUGUUUUGGC-----CGG--ACCCGU---UAGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.