miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
269 5' -62.7 AC_000008.1 + 26697 1.11 0.000064
Target:  5'- aCCGGCGGCAGCGGCAGCGGCAGCAACa -3'
miRNA:   3'- -GGCCGCCGUCGCCGUCGCCGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 15061 0.86 0.006166
Target:  5'- -aGGCGGCAGCaacaGCAGUGGCAGCGGCg -3'
miRNA:   3'- ggCCGCCGUCGc---CGUCGCCGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 19691 0.84 0.009322
Target:  5'- -gGGCGGCAGUgccgggucGGCGGCGGUGGCGACg -3'
miRNA:   3'- ggCCGCCGUCG--------CCGUCGCCGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 9697 0.82 0.013673
Target:  5'- -gGGUGGCGGCGGCAGCuGCAGCuuCu -3'
miRNA:   3'- ggCCGCCGUCGCCGUCGcCGUCGuuG- -5'
269 5' -62.7 AC_000008.1 + 9397 0.81 0.017814
Target:  5'- uCUGGCGGCGGUGGgGGaggggggacaCGGCGGCGACg -3'
miRNA:   3'- -GGCCGCCGUCGCCgUC----------GCCGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 2652 0.81 0.018345
Target:  5'- -aGGaCGG-AGCGGCGGCGGCAGCAGu -3'
miRNA:   3'- ggCC-GCCgUCGCCGUCGCCGUCGUUg -5'
269 5' -62.7 AC_000008.1 + 32080 0.8 0.020034
Target:  5'- gCgGGCGGUGGCuGCAGCGGCugaAGCGGCg -3'
miRNA:   3'- -GgCCGCCGUCGcCGUCGCCG---UCGUUG- -5'
269 5' -62.7 AC_000008.1 + 18379 0.78 0.030178
Target:  5'- aCGGCGGCGGCGGguucCAGUGGUGGUucGGCg -3'
miRNA:   3'- gGCCGCCGUCGCC----GUCGCCGUCG--UUG- -5'
269 5' -62.7 AC_000008.1 + 10457 0.78 0.031071
Target:  5'- gCCGGCGGCGGUGGUGGaGGCGcGCGGa -3'
miRNA:   3'- -GGCCGCCGUCGCCGUCgCCGU-CGUUg -5'
269 5' -62.7 AC_000008.1 + 9742 0.77 0.031897
Target:  5'- gCgGGCGGCAGCgGGCGGCGGUcgggguuguuucuGGCGGa -3'
miRNA:   3'- -GgCCGCCGUCG-CCGUCGCCG-------------UCGUUg -5'
269 5' -62.7 AC_000008.1 + 17773 0.77 0.034609
Target:  5'- aCCGGCGGCGGCGcgcgucgcaccgucGCAugcGCGGCGGUAu- -3'
miRNA:   3'- -GGCCGCCGUCGC--------------CGU---CGCCGUCGUug -5'
269 5' -62.7 AC_000008.1 + 17089 0.76 0.041563
Target:  5'- gCgGGCGcGCGGCGGCucAGCagcuccucuGGCGGCGACa -3'
miRNA:   3'- -GgCCGC-CGUCGCCG--UCG---------CCGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 20657 0.75 0.049447
Target:  5'- cUCGGguUGcGCAGCGGgGGCGGCAGCuuCg -3'
miRNA:   3'- -GGCC--GC-CGUCGCCgUCGCCGUCGuuG- -5'
269 5' -62.7 AC_000008.1 + 2172 0.75 0.052386
Target:  5'- -aGGaaGCcaGGCGGCGGCGGCAGgAGCa -3'
miRNA:   3'- ggCCgcCG--UCGCCGUCGCCGUCgUUG- -5'
269 5' -62.7 AC_000008.1 + 10342 0.74 0.058781
Target:  5'- -aGuGCGGCGGCGGCuGGCGGUAGaggggcCAGCg -3'
miRNA:   3'- ggC-CGCCGUCGCCG-UCGCCGUC------GUUG- -5'
269 5' -62.7 AC_000008.1 + 11791 0.74 0.062256
Target:  5'- uUGGCGGCAuCGGUggaGGCGGUGGUGGCg -3'
miRNA:   3'- gGCCGCCGUcGCCG---UCGCCGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 14202 0.74 0.064067
Target:  5'- gCGGCGcCAGUGGCGGCGGC-GCu-- -3'
miRNA:   3'- gGCCGCcGUCGCCGUCGCCGuCGuug -5'
269 5' -62.7 AC_000008.1 + 32297 0.72 0.092743
Target:  5'- aUGGCGGCGGCGGCuGCuGCAa-AACa -3'
miRNA:   3'- gGCCGCCGUCGCCGuCGcCGUcgUUG- -5'
269 5' -62.7 AC_000008.1 + 23880 0.71 0.095394
Target:  5'- uUGGgGGCGcccGgGGaGGCGGCGGCGACg -3'
miRNA:   3'- gGCCgCCGU---CgCCgUCGCCGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 10005 0.71 0.103787
Target:  5'- gCGGCGGCGGCGG-AGUuuGGCcguaGGUGGCg -3'
miRNA:   3'- gGCCGCCGUCGCCgUCG--CCG----UCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.