miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
269 5' -62.7 AC_000008.1 + 33191 0.67 0.200004
Target:  5'- -aGGauagGGCGGUGGU-GCuGCAGCAGCg -3'
miRNA:   3'- ggCCg---CCGUCGCCGuCGcCGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 12190 0.71 0.109763
Target:  5'- -gGGCuGGCGGUGGCAcccGCGcGCgcuGGCAACg -3'
miRNA:   3'- ggCCG-CCGUCGCCGU---CGC-CG---UCGUUG- -5'
269 5' -62.7 AC_000008.1 + 26791 0.7 0.119335
Target:  5'- gCGGCGGCAGCaGCAGgaGG-AGgAGCg -3'
miRNA:   3'- gGCCGCCGUCGcCGUCg-CCgUCgUUG- -5'
269 5' -62.7 AC_000008.1 + 16501 0.69 0.152886
Target:  5'- ------cCAGCGGCGGCGGCGcGCAACg -3'
miRNA:   3'- ggccgccGUCGCCGUCGCCGU-CGUUG- -5'
269 5' -62.7 AC_000008.1 + 16321 0.68 0.165853
Target:  5'- uCCaGGCGaCgAGCGGCcGCcGCAGCAGCc -3'
miRNA:   3'- -GG-CCGCcG-UCGCCGuCGcCGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 12678 0.68 0.165853
Target:  5'- gUGGC-GCAGCGugaGC-GCGcGCAGCAGCa -3'
miRNA:   3'- gGCCGcCGUCGC---CGuCGC-CGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 2131 0.68 0.178359
Target:  5'- cCCGGCGauaauaccgacggaGgAGCaGCAGCaGCAGCAGg -3'
miRNA:   3'- -GGCCGC--------------CgUCGcCGUCGcCGUCGUUg -5'
269 5' -62.7 AC_000008.1 + 17259 0.68 0.179799
Target:  5'- gCGGUGGCGgaugccGCGGUgcaGGCGGUcgcuGCGGCc -3'
miRNA:   3'- gGCCGCCGU------CGCCG---UCGCCGu---CGUUG- -5'
269 5' -62.7 AC_000008.1 + 30467 0.67 0.193229
Target:  5'- gCaGCGccugcuagaaagacGCAG-GGCAGCGGCcgAGCAACa -3'
miRNA:   3'- gGcCGC--------------CGUCgCCGUCGCCG--UCGUUG- -5'
269 5' -62.7 AC_000008.1 + 12326 0.71 0.106736
Target:  5'- cCCGGCGGUgcgGGCGGC-GCuGCAGagcCAGCc -3'
miRNA:   3'- -GGCCGCCG---UCGCCGuCGcCGUC---GUUG- -5'
269 5' -62.7 AC_000008.1 + 10005 0.71 0.103787
Target:  5'- gCGGCGGCGGCGG-AGUuuGGCcguaGGUGGCg -3'
miRNA:   3'- gGCCGCCGUCGCCgUCG--CCG----UCGUUG- -5'
269 5' -62.7 AC_000008.1 + 23880 0.71 0.095394
Target:  5'- uUGGgGGCGcccGgGGaGGCGGCGGCGACg -3'
miRNA:   3'- gGCCgCCGU---CgCCgUCGCCGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 15061 0.86 0.006166
Target:  5'- -aGGCGGCAGCaacaGCAGUGGCAGCGGCg -3'
miRNA:   3'- ggCCGCCGUCGc---CGUCGCCGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 9397 0.81 0.017814
Target:  5'- uCUGGCGGCGGUGGgGGaggggggacaCGGCGGCGACg -3'
miRNA:   3'- -GGCCGCCGUCGCCgUC----------GCCGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 10457 0.78 0.031071
Target:  5'- gCCGGCGGCGGUGGUGGaGGCGcGCGGa -3'
miRNA:   3'- -GGCCGCCGUCGCCGUCgCCGU-CGUUg -5'
269 5' -62.7 AC_000008.1 + 9742 0.77 0.031897
Target:  5'- gCgGGCGGCAGCgGGCGGCGGUcgggguuguuucuGGCGGa -3'
miRNA:   3'- -GgCCGCCGUCG-CCGUCGCCG-------------UCGUUg -5'
269 5' -62.7 AC_000008.1 + 17773 0.77 0.034609
Target:  5'- aCCGGCGGCGGCGcgcgucgcaccgucGCAugcGCGGCGGUAu- -3'
miRNA:   3'- -GGCCGCCGUCGC--------------CGU---CGCCGUCGUug -5'
269 5' -62.7 AC_000008.1 + 2172 0.75 0.052386
Target:  5'- -aGGaaGCcaGGCGGCGGCGGCAGgAGCa -3'
miRNA:   3'- ggCCgcCG--UCGCCGUCGCCGUCgUUG- -5'
269 5' -62.7 AC_000008.1 + 10342 0.74 0.058781
Target:  5'- -aGuGCGGCGGCGGCuGGCGGUAGaggggcCAGCg -3'
miRNA:   3'- ggC-CGCCGUCGCCG-UCGCCGUC------GUUG- -5'
269 5' -62.7 AC_000008.1 + 14202 0.74 0.064067
Target:  5'- gCGGCGcCAGUGGCGGCGGC-GCu-- -3'
miRNA:   3'- gGCCGCcGUCGCCGUCGCCGuCGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.