miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
269 5' -62.7 AC_000008.1 + 1677 0.68 0.179799
Target:  5'- gCGGUGGUGGauguuaucagGGCAGCGGC-GCAu- -3'
miRNA:   3'- gGCCGCCGUCg---------CCGUCGCCGuCGUug -5'
269 5' -62.7 AC_000008.1 + 2131 0.68 0.178359
Target:  5'- cCCGGCGauaauaccgacggaGgAGCaGCAGCaGCAGCAGg -3'
miRNA:   3'- -GGCCGC--------------CgUCGcCGUCGcCGUCGUUg -5'
269 5' -62.7 AC_000008.1 + 2172 0.75 0.052386
Target:  5'- -aGGaaGCcaGGCGGCGGCGGCAGgAGCa -3'
miRNA:   3'- ggCCgcCG--UCGCCGUCGCCGUCgUUG- -5'
269 5' -62.7 AC_000008.1 + 2652 0.81 0.018345
Target:  5'- -aGGaCGG-AGCGGCGGCGGCAGCAGu -3'
miRNA:   3'- ggCC-GCCgUCGCCGUCGCCGUCGUUg -5'
269 5' -62.7 AC_000008.1 + 4541 0.66 0.246366
Target:  5'- gCGGCGGCAGCcaCAGUuagGGCuucugaGGUAACu -3'
miRNA:   3'- gGCCGCCGUCGccGUCG---CCG------UCGUUG- -5'
269 5' -62.7 AC_000008.1 + 6392 0.67 0.189665
Target:  5'- --uGUGGUAGauguaagucCGGUAGCGGCGGCcGCg -3'
miRNA:   3'- ggcCGCCGUC---------GCCGUCGCCGUCGuUG- -5'
269 5' -62.7 AC_000008.1 + 7501 0.69 0.144759
Target:  5'- -aGGCGGUAgGUGugguGCAGCGGcCGGUGACg -3'
miRNA:   3'- ggCCGCCGU-CGC----CGUCGCC-GUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 8472 0.66 0.255341
Target:  5'- uUGGUGGCGGCGucgauggcuuGCAagaggccgcauccccGCGGC-GCGACu -3'
miRNA:   3'- gGCCGCCGUCGC----------CGU---------------CGCCGuCGUUG- -5'
269 5' -62.7 AC_000008.1 + 8635 0.66 0.220426
Target:  5'- -aGGgGGCAGgGGCAcgucggcgccgcgcGCGGgCAGgAGCu -3'
miRNA:   3'- ggCCgCCGUCgCCGU--------------CGCC-GUCgUUG- -5'
269 5' -62.7 AC_000008.1 + 9397 0.81 0.017814
Target:  5'- uCUGGCGGCGGUGGgGGaggggggacaCGGCGGCGACg -3'
miRNA:   3'- -GGCCGCCGUCGCCgUC----------GCCGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 9697 0.82 0.013673
Target:  5'- -gGGUGGCGGCGGCAGCuGCAGCuuCu -3'
miRNA:   3'- ggCCGCCGUCGCCGUCGcCGUCGuuG- -5'
269 5' -62.7 AC_000008.1 + 9742 0.77 0.031897
Target:  5'- gCgGGCGGCAGCgGGCGGCGGUcgggguuguuucuGGCGGa -3'
miRNA:   3'- -GgCCGCCGUCG-CCGUCGCCG-------------UCGUUg -5'
269 5' -62.7 AC_000008.1 + 9750 0.69 0.140845
Target:  5'- gCCcGCGGCuGCugcugauagGGCuGCGGCGGCGGg -3'
miRNA:   3'- -GGcCGCCGuCG---------CCGuCGCCGUCGUUg -5'
269 5' -62.7 AC_000008.1 + 10005 0.71 0.103787
Target:  5'- gCGGCGGCGGCGG-AGUuuGGCcguaGGUGGCg -3'
miRNA:   3'- gGCCGCCGUCGCCgUCG--CCG----UCGUUG- -5'
269 5' -62.7 AC_000008.1 + 10250 0.66 0.222158
Target:  5'- -aGGUaGCAGUGGCcccaaAGCGGCGGagGGCa -3'
miRNA:   3'- ggCCGcCGUCGCCG-----UCGCCGUCg-UUG- -5'
269 5' -62.7 AC_000008.1 + 10342 0.74 0.058781
Target:  5'- -aGuGCGGCGGCGGCuGGCGGUAGaggggcCAGCg -3'
miRNA:   3'- ggC-CGCCGUCGCCG-UCGCCGUC------GUUG- -5'
269 5' -62.7 AC_000008.1 + 10457 0.78 0.031071
Target:  5'- gCCGGCGGCGGUGGUGGaGGCGcGCGGa -3'
miRNA:   3'- -GGCCGCCGUCGCCGUCgCCGU-CGUUg -5'
269 5' -62.7 AC_000008.1 + 11044 0.67 0.216431
Target:  5'- uCCGGU-GCuGCGGCAgauGCGccccccuccucaGCAGCGGCa -3'
miRNA:   3'- -GGCCGcCGuCGCCGU---CGC------------CGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 11145 0.67 0.216431
Target:  5'- -gGGCGaCAuccGCGGUugacGCGGCAGCAGa -3'
miRNA:   3'- ggCCGCcGU---CGCCGu---CGCCGUCGUUg -5'
269 5' -62.7 AC_000008.1 + 11791 0.74 0.062256
Target:  5'- uUGGCGGCAuCGGUggaGGCGGUGGUGGCg -3'
miRNA:   3'- gGCCGCCGUcGCCG---UCGCCGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.