miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26903 3' -59.8 NC_005809.1 + 8984 1.12 0.000168
Target:  5'- gGCCGUGCCGCGAUAGCCAGCGGUGGCc -3'
miRNA:   3'- -CGGCACGGCGCUAUCGGUCGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 9128 1.12 0.000168
Target:  5'- gGCCGUGCCGCGAUAGCCAGCGGUGGCc -3'
miRNA:   3'- -CGGCACGGCGCUAUCGGUCGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 9272 1.12 0.000168
Target:  5'- gGCCGUGCCGCGAUAGCCAGCGGUGGCc -3'
miRNA:   3'- -CGGCACGGCGCUAUCGGUCGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 9200 0.92 0.00548
Target:  5'- gGCCGUGCCG-GAUucGCCAGCGGUGGCc -3'
miRNA:   3'- -CGGCACGGCgCUAu-CGGUCGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 9344 0.92 0.00548
Target:  5'- gGCCGUGCCG-GAUucGCCAGCGGUGGCc -3'
miRNA:   3'- -CGGCACGGCgCUAu-CGGUCGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 9080 0.92 0.005644
Target:  5'- gGCCGUGCCGUaAUuGCCAGCGGUGGCc -3'
miRNA:   3'- -CGGCACGGCGcUAuCGGUCGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 9032 0.92 0.005644
Target:  5'- gGCCGUGCCGUaAUuGCCAGCGGUGGCc -3'
miRNA:   3'- -CGGCACGGCGcUAuCGGUCGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 8937 0.92 0.005644
Target:  5'- gGCCGUGCCGUaAUuGCCAGCGGUGGCc -3'
miRNA:   3'- -CGGCACGGCGcUAuCGGUCGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 9225 0.87 0.013239
Target:  5'- nCCGUGCCG-GAUucGCCAGCGGUGGCc -3'
miRNA:   3'- cGGCACGGCgCUAu-CGGUCGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 9153 0.87 0.013239
Target:  5'- nCCGUGCCG-GAUucGCCAGCGGUGGCc -3'
miRNA:   3'- cGGCACGGCgCUAu-CGGUCGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 9297 0.87 0.013239
Target:  5'- nCCGUGCCG-GAUucGCCAGCGGUGGCc -3'
miRNA:   3'- cGGCACGGCgCUAu-CGGUCGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 9369 0.87 0.013239
Target:  5'- nCCGUGCCG-GAUucGCCAGCGGUGGCc -3'
miRNA:   3'- cGGCACGGCgCUAu-CGGUCGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 4427 0.84 0.021213
Target:  5'- aUCGUGCCGCGccagggggaagccGCCAGCGGUGGCa -3'
miRNA:   3'- cGGCACGGCGCuau----------CGGUCGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 14008 0.82 0.028314
Target:  5'- gGCCGacgugcgcGCCGCGAUGGCCGGCGGccGCa -3'
miRNA:   3'- -CGGCa-------CGGCGCUAUCGGUCGCCacCG- -5'
26903 3' -59.8 NC_005809.1 + 23628 0.81 0.036774
Target:  5'- -aCGUGCgguugguuuCGCGGUAGCCGGCGGcgGGCa -3'
miRNA:   3'- cgGCACG---------GCGCUAUCGGUCGCCa-CCG- -5'
26903 3' -59.8 NC_005809.1 + 3727 0.76 0.084447
Target:  5'- cCCGUGCCGUucacGCCGGUGGUGGg -3'
miRNA:   3'- cGGCACGGCGcuauCGGUCGCCACCg -5'
26903 3' -59.8 NC_005809.1 + 19616 0.75 0.10484
Target:  5'- uGCCGUccggggucaugcggGCCGCGAcaucGGCCAGCgucggguuGGUGGUg -3'
miRNA:   3'- -CGGCA--------------CGGCGCUa---UCGGUCG--------CCACCG- -5'
26903 3' -59.8 NC_005809.1 + 21573 0.74 0.111782
Target:  5'- cUCGUGCCGCuc-GGCCAcuuCGGUGGCg -3'
miRNA:   3'- cGGCACGGCGcuaUCGGUc--GCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 29926 0.74 0.118165
Target:  5'- cGCaucaGUGCCGUGGcuuGCCAGUcaGGUGGUg -3'
miRNA:   3'- -CGg---CACGGCGCUau-CGGUCG--CCACCG- -5'
26903 3' -59.8 NC_005809.1 + 4040 0.74 0.121482
Target:  5'- aGCCG-GCCGCGGcgagcggcaGGCCAGCGGcccaggggggauUGGUa -3'
miRNA:   3'- -CGGCaCGGCGCUa--------UCGGUCGCC------------ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.