miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26903 3' -59.8 NC_005809.1 + 231 0.67 0.336193
Target:  5'- uGCCGcaUGuuGUag-GGCCGGCGGUaGCg -3'
miRNA:   3'- -CGGC--ACggCGcuaUCGGUCGCCAcCG- -5'
26903 3' -59.8 NC_005809.1 + 318 0.68 0.320408
Target:  5'- aCCGUcccuaCCGUca-GGCUGGCGGUGGCg -3'
miRNA:   3'- cGGCAc----GGCGcuaUCGGUCGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 1708 0.7 0.214008
Target:  5'- cGCCGUggGCCgGCGu--GCCGGCGaG-GGCg -3'
miRNA:   3'- -CGGCA--CGG-CGCuauCGGUCGC-CaCCG- -5'
26903 3' -59.8 NC_005809.1 + 1859 0.68 0.297783
Target:  5'- cGCCGUcuugcagguucaGCC-CG-UGGCCGGCGcUGGCc -3'
miRNA:   3'- -CGGCA------------CGGcGCuAUCGGUCGCcACCG- -5'
26903 3' -59.8 NC_005809.1 + 2108 0.66 0.432799
Target:  5'- cGCCGUGUCGuCGGUAuagauugcGCCguuGGCGaGUugcaGGCa -3'
miRNA:   3'- -CGGCACGGC-GCUAU--------CGG---UCGC-CA----CCG- -5'
26903 3' -59.8 NC_005809.1 + 3727 0.76 0.084447
Target:  5'- cCCGUGCCGUucacGCCGGUGGUGGg -3'
miRNA:   3'- cGGCACGGCGcuauCGGUCGCCACCg -5'
26903 3' -59.8 NC_005809.1 + 3783 0.66 0.404864
Target:  5'- gGUCGUGCCGaa--AGCCAGCGccUGGa -3'
miRNA:   3'- -CGGCACGGCgcuaUCGGUCGCc-ACCg -5'
26903 3' -59.8 NC_005809.1 + 3924 0.67 0.360919
Target:  5'- gGCCGcGCCcccauGCGAguuugaaAGCCAGCGaacGGCg -3'
miRNA:   3'- -CGGCaCGG-----CGCUa------UCGGUCGCca-CCG- -5'
26903 3' -59.8 NC_005809.1 + 3935 0.68 0.32352
Target:  5'- uGCCGU-CCGCGAUGGUCAcguuguauuuGCuggugccaucgaucaGGUGGUu -3'
miRNA:   3'- -CGGCAcGGCGCUAUCGGU----------CG---------------CCACCG- -5'
26903 3' -59.8 NC_005809.1 + 4018 0.66 0.385999
Target:  5'- cGCCGgccaccagcgucaUGCCGCGcgGGUCgAGCGcagccgGGCg -3'
miRNA:   3'- -CGGC-------------ACGGCGCuaUCGG-UCGCca----CCG- -5'
26903 3' -59.8 NC_005809.1 + 4040 0.74 0.121482
Target:  5'- aGCCG-GCCGCGGcgagcggcaGGCCAGCGGcccaggggggauUGGUa -3'
miRNA:   3'- -CGGCaCGGCGCUa--------UCGGUCGCC------------ACCG- -5'
26903 3' -59.8 NC_005809.1 + 4172 0.67 0.369438
Target:  5'- cGCCGUgGUCGagguGUAGCCAGUGG-GcGCc -3'
miRNA:   3'- -CGGCA-CGGCgc--UAUCGGUCGCCaC-CG- -5'
26903 3' -59.8 NC_005809.1 + 4178 0.68 0.312725
Target:  5'- aGCCG-GCCGCcucGAUGGCgGGCauguUGGCc -3'
miRNA:   3'- -CGGCaCGGCG---CUAUCGgUCGcc--ACCG- -5'
26903 3' -59.8 NC_005809.1 + 4274 0.69 0.2834
Target:  5'- cGCCG-GCaugGUGAUGGCCgugucGGCGGUGaacuGCa -3'
miRNA:   3'- -CGGCaCGg--CGCUAUCGG-----UCGCCAC----CG- -5'
26903 3' -59.8 NC_005809.1 + 4427 0.84 0.021213
Target:  5'- aUCGUGCCGCGccagggggaagccGCCAGCGGUGGCa -3'
miRNA:   3'- cGGCACGGCGCuau----------CGGUCGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 4801 0.66 0.4328
Target:  5'- cGCCGgcuggcGCUGCGGgauugcUGGCCGGCGacaGGUc -3'
miRNA:   3'- -CGGCa-----CGGCGCU------AUCGGUCGCca-CCG- -5'
26903 3' -59.8 NC_005809.1 + 5317 0.72 0.164088
Target:  5'- gGCCGUagGCCGCGAgcacgUGGCgCAGCa-UGGCa -3'
miRNA:   3'- -CGGCA--CGGCGCU-----AUCG-GUCGccACCG- -5'
26903 3' -59.8 NC_005809.1 + 5626 0.69 0.262865
Target:  5'- cGCgCGUGgCGCGGcgcAGCUuGCuGGUGGCu -3'
miRNA:   3'- -CG-GCACgGCGCUa--UCGGuCG-CCACCG- -5'
26903 3' -59.8 NC_005809.1 + 6591 0.7 0.229562
Target:  5'- gGCCaGgggGCUGCGGUcuuugucgaugaccAGCgGGCGcGUGGCg -3'
miRNA:   3'- -CGG-Ca--CGGCGCUA--------------UCGgUCGC-CACCG- -5'
26903 3' -59.8 NC_005809.1 + 7256 0.69 0.28129
Target:  5'- gGCCGaUGUCGCc--GGCCuugugcagcuucucGGCGGUGGUc -3'
miRNA:   3'- -CGGC-ACGGCGcuaUCGG--------------UCGCCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.