miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26903 3' -59.8 NC_005809.1 + 27814 0.69 0.249857
Target:  5'- aGCaCGUccucGCgCGCGcu-GCCcGCGGUGGCg -3'
miRNA:   3'- -CG-GCA----CG-GCGCuauCGGuCGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 23715 0.71 0.187591
Target:  5'- cGCCcagGUCGCG--GGCCAGUgccucGGUGGCg -3'
miRNA:   3'- -CGGca-CGGCGCuaUCGGUCG-----CCACCG- -5'
26903 3' -59.8 NC_005809.1 + 1708 0.7 0.214008
Target:  5'- cGCCGUggGCCgGCGu--GCCGGCGaG-GGCg -3'
miRNA:   3'- -CGGCA--CGG-CGCuauCGGUCGC-CaCCG- -5'
26903 3' -59.8 NC_005809.1 + 24591 0.7 0.217384
Target:  5'- gGCCGUccggcguguccuuGCCGgGGUAgGUCAGCGGcacgucgaaccacaUGGCg -3'
miRNA:   3'- -CGGCA-------------CGGCgCUAU-CGGUCGCC--------------ACCG- -5'
26903 3' -59.8 NC_005809.1 + 10208 0.7 0.21966
Target:  5'- cGCCG-GCC-CGAUGGUCGGCGGa--- -3'
miRNA:   3'- -CGGCaCGGcGCUAUCGGUCGCCaccg -5'
26903 3' -59.8 NC_005809.1 + 11597 0.7 0.22544
Target:  5'- cGCCGgcugGCCGcCGGgcagcaguGCCAGCGGaaGCa -3'
miRNA:   3'- -CGGCa---CGGC-GCUau------CGGUCGCCacCG- -5'
26903 3' -59.8 NC_005809.1 + 18368 0.7 0.231348
Target:  5'- uGCCG-GCgGCGAgguUGGCCuugccgauGGCgccGGUGGCg -3'
miRNA:   3'- -CGGCaCGgCGCU---AUCGG--------UCG---CCACCG- -5'
26903 3' -59.8 NC_005809.1 + 30563 0.7 0.242932
Target:  5'- uGCCG-GCCGCuguagaugcggcaGAUGGUgGGCugggauacgucGGUGGCa -3'
miRNA:   3'- -CGGCaCGGCG-------------CUAUCGgUCG-----------CCACCG- -5'
26903 3' -59.8 NC_005809.1 + 8613 0.7 0.243555
Target:  5'- aGCUG-GuuGCGcuucucGGCCGcuGCGGUGGCg -3'
miRNA:   3'- -CGGCaCggCGCua----UCGGU--CGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 25580 0.71 0.187591
Target:  5'- aGuuGUacGCCGCGGUcugcGGCCcaGGCaGUGGCa -3'
miRNA:   3'- -CggCA--CGGCGCUA----UCGG--UCGcCACCG- -5'
26903 3' -59.8 NC_005809.1 + 18281 0.72 0.177853
Target:  5'- uGCCG-GCCGUc--AGCgGGcCGGUGGCg -3'
miRNA:   3'- -CGGCaCGGCGcuaUCGgUC-GCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 8394 0.72 0.168566
Target:  5'- cGCUG-GCUGCG-UAGCCAGuCGGccagGGCc -3'
miRNA:   3'- -CGGCaCGGCGCuAUCGGUC-GCCa---CCG- -5'
26903 3' -59.8 NC_005809.1 + 23628 0.81 0.036774
Target:  5'- -aCGUGCgguugguuuCGCGGUAGCCGGCGGcgGGCa -3'
miRNA:   3'- cgGCACG---------GCGCUAUCGGUCGCCa-CCG- -5'
26903 3' -59.8 NC_005809.1 + 3727 0.76 0.084447
Target:  5'- cCCGUGCCGUucacGCCGGUGGUGGg -3'
miRNA:   3'- cGGCACGGCGcuauCGGUCGCCACCg -5'
26903 3' -59.8 NC_005809.1 + 19616 0.75 0.10484
Target:  5'- uGCCGUccggggucaugcggGCCGCGAcaucGGCCAGCgucggguuGGUGGUg -3'
miRNA:   3'- -CGGCA--------------CGGCGCUa---UCGGUCG--------CCACCG- -5'
26903 3' -59.8 NC_005809.1 + 21573 0.74 0.111782
Target:  5'- cUCGUGCCGCuc-GGCCAcuuCGGUGGCg -3'
miRNA:   3'- cGGCACGGCGcuaUCGGUc--GCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 29926 0.74 0.118165
Target:  5'- cGCaucaGUGCCGUGGcuuGCCAGUcaGGUGGUg -3'
miRNA:   3'- -CGg---CACGGCGCUau-CGGUCG--CCACCG- -5'
26903 3' -59.8 NC_005809.1 + 31080 0.73 0.143266
Target:  5'- gGCCugGUGCCGCugcucaccucGGUgcaGGCCGGCGaGUGGUg -3'
miRNA:   3'- -CGG--CACGGCG----------CUA---UCGGUCGC-CACCG- -5'
26903 3' -59.8 NC_005809.1 + 7469 0.73 0.147227
Target:  5'- aGCUGcGCCGCG-UAG-UGGCGGUGGUa -3'
miRNA:   3'- -CGGCaCGGCGCuAUCgGUCGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 40543 0.72 0.159717
Target:  5'- cGCCGagGCgGcCGGUAuGCCGGUgcuGGUGGCg -3'
miRNA:   3'- -CGGCa-CGgC-GCUAU-CGGUCG---CCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.