miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26914 5' -55.7 NC_005809.1 + 31351 0.66 0.626795
Target:  5'- gGGcGUGGGCGggaaCGuGGCGGUCAUGcGCg -3'
miRNA:   3'- aUC-UACUUGUg---GC-CCGCCAGUAC-CGg -5'
26914 5' -55.7 NC_005809.1 + 6614 0.66 0.626795
Target:  5'- -cGAUGAcCAgCGGGCG--CGUGGCg -3'
miRNA:   3'- auCUACUuGUgGCCCGCcaGUACCGg -5'
26914 5' -55.7 NC_005809.1 + 29041 0.66 0.626795
Target:  5'- cAGGUcGAUACCcaccGGCGGcUCGUaGGCCa -3'
miRNA:   3'- aUCUAcUUGUGGc---CCGCC-AGUA-CCGG- -5'
26914 5' -55.7 NC_005809.1 + 30992 0.66 0.615564
Target:  5'- cAGccGGcgGCcCUGGGCGG-CAUGGCUu -3'
miRNA:   3'- aUCuaCU--UGuGGCCCGCCaGUACCGG- -5'
26914 5' -55.7 NC_005809.1 + 34798 0.66 0.615564
Target:  5'- aGGGUGGACGCCGGcGCaGaUCGc-GCCg -3'
miRNA:   3'- aUCUACUUGUGGCC-CGcC-AGUacCGG- -5'
26914 5' -55.7 NC_005809.1 + 17262 0.66 0.615564
Target:  5'- -cGAcGAGCGCC-GGUGG-CAgGGCCg -3'
miRNA:   3'- auCUaCUUGUGGcCCGCCaGUaCCGG- -5'
26914 5' -55.7 NC_005809.1 + 4258 0.66 0.615564
Target:  5'- -cGGUGccggccgucAGCGCCGGcaUGGUgAUGGCCg -3'
miRNA:   3'- auCUAC---------UUGUGGCCc-GCCAgUACCGG- -5'
26914 5' -55.7 NC_005809.1 + 10189 0.66 0.615564
Target:  5'- -cGGUGcuGGCuuccuGCUGGGCGGcCggGGCCu -3'
miRNA:   3'- auCUAC--UUG-----UGGCCCGCCaGuaCCGG- -5'
26914 5' -55.7 NC_005809.1 + 1366 0.66 0.604348
Target:  5'- gGGAUGGugacauaggGCGCCGcGGCcacgcgcacaacGGuuucacUCAUGGCCg -3'
miRNA:   3'- aUCUACU---------UGUGGC-CCG------------CC------AGUACCGG- -5'
26914 5' -55.7 NC_005809.1 + 41581 0.66 0.593157
Target:  5'- -cGGUGAaccacgGCACCGgccaGGCGGcCAagUGGCUg -3'
miRNA:   3'- auCUACU------UGUGGC----CCGCCaGU--ACCGG- -5'
26914 5' -55.7 NC_005809.1 + 24567 0.66 0.593157
Target:  5'- -cGAUGGcgAgGCCGGccaCGGUCG-GGCCg -3'
miRNA:   3'- auCUACU--UgUGGCCc--GCCAGUaCCGG- -5'
26914 5' -55.7 NC_005809.1 + 7158 0.66 0.582001
Target:  5'- cUGGAUGAccaGgGCCGGGCGcuuGUCGgauucgggGGCg -3'
miRNA:   3'- -AUCUACU---UgUGGCCCGC---CAGUa-------CCGg -5'
26914 5' -55.7 NC_005809.1 + 22768 0.66 0.575327
Target:  5'- aGGGUGAgggccgauuggucaACGCCcugcGGGcCGGUCAgcauggugccggacUGGCCc -3'
miRNA:   3'- aUCUACU--------------UGUGG----CCC-GCCAGU--------------ACCGG- -5'
26914 5' -55.7 NC_005809.1 + 5460 0.66 0.570887
Target:  5'- -cGAUGuuccCGCCGGGCGG-CGaGGUg -3'
miRNA:   3'- auCUACuu--GUGGCCCGCCaGUaCCGg -5'
26914 5' -55.7 NC_005809.1 + 2221 0.66 0.570887
Target:  5'- cGGGU-AGCACCacgcgcagcaGGCGGcgCGUGGCCg -3'
miRNA:   3'- aUCUAcUUGUGGc---------CCGCCa-GUACCGG- -5'
26914 5' -55.7 NC_005809.1 + 5825 0.66 0.570887
Target:  5'- gGGcAUGGcgugccgcaGCACCGuGCGGUCgaaGUGGCUa -3'
miRNA:   3'- aUC-UACU---------UGUGGCcCGCCAG---UACCGG- -5'
26914 5' -55.7 NC_005809.1 + 18855 0.67 0.537893
Target:  5'- ----aGAAgGCCGGGCGGccCAUGcCCa -3'
miRNA:   3'- aucuaCUUgUGGCCCGCCa-GUACcGG- -5'
26914 5' -55.7 NC_005809.1 + 9837 0.67 0.527037
Target:  5'- ---uUGGugG--GGGCGGUCAUGGCg -3'
miRNA:   3'- aucuACUugUggCCCGCCAGUACCGg -5'
26914 5' -55.7 NC_005809.1 + 34433 0.68 0.473095
Target:  5'- gAGGUGAACggcaaggGCUGGGaaGUCAccgccgaaaUGGCCg -3'
miRNA:   3'- aUCUACUUG-------UGGCCCgcCAGU---------ACCGG- -5'
26914 5' -55.7 NC_005809.1 + 39910 0.68 0.453713
Target:  5'- -uGAUcGAACACUGGGCGaccgC-UGGCCc -3'
miRNA:   3'- auCUA-CUUGUGGCCCGCca--GuACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.