miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26916 3' -59.2 NC_005809.1 + 14306 0.66 0.410735
Target:  5'- cAGCgcGCGGUCAUggugcgcaacaUGGUgaGCCUGGCg -3'
miRNA:   3'- -UCGaaCGUCGGUGa----------ACCGg-CGGACCG- -5'
26916 3' -59.2 NC_005809.1 + 2830 0.66 0.407914
Target:  5'- uGCUcGCGGCCACgcgcagcgGcGCCagcaccagcgagggGCCUGGUu -3'
miRNA:   3'- uCGAaCGUCGGUGaa------C-CGG--------------CGGACCG- -5'
26916 3' -59.2 NC_005809.1 + 18065 0.66 0.392158
Target:  5'- cGGCgcggGguGCgUGCUgGGCCGCCgaagccGGCg -3'
miRNA:   3'- -UCGaa--CguCG-GUGAaCCGGCGGa-----CCG- -5'
26916 3' -59.2 NC_005809.1 + 36186 0.66 0.392158
Target:  5'- cGaggGC-GCCGCggcGGCCGaCCUGGUg -3'
miRNA:   3'- uCgaaCGuCGGUGaa-CCGGC-GGACCG- -5'
26916 3' -59.2 NC_005809.1 + 39716 0.66 0.383076
Target:  5'- uGGCUcUGCcaacGCUacgGCUUGGCgGgCUGGCc -3'
miRNA:   3'- -UCGA-ACGu---CGG---UGAACCGgCgGACCG- -5'
26916 3' -59.2 NC_005809.1 + 12870 0.66 0.374136
Target:  5'- cAGCUUGUuguagAGCCACaggcucgUGGUgucguCGCCUuuGGCg -3'
miRNA:   3'- -UCGAACG-----UCGGUGa------ACCG-----GCGGA--CCG- -5'
26916 3' -59.2 NC_005809.1 + 9210 0.66 0.374136
Target:  5'- cGGCggcGCGGCgCACguucugcGGCgCGCCcGGCg -3'
miRNA:   3'- -UCGaa-CGUCG-GUGaa-----CCG-GCGGaCCG- -5'
26916 3' -59.2 NC_005809.1 + 34166 0.66 0.365337
Target:  5'- aAGCgcaCGGCC-C-UGGCCGaCUGGCu -3'
miRNA:   3'- -UCGaacGUCGGuGaACCGGCgGACCG- -5'
26916 3' -59.2 NC_005809.1 + 34334 0.66 0.365337
Target:  5'- cGCUUGaagcgcaAGCUGCUgacGGCCGCCgaccaGCg -3'
miRNA:   3'- uCGAACg------UCGGUGAa--CCGGCGGac---CG- -5'
26916 3' -59.2 NC_005809.1 + 9962 0.66 0.365337
Target:  5'- cGGCgucGCGGCC-CUUgaccgGGCCaGCUUGGUc -3'
miRNA:   3'- -UCGaa-CGUCGGuGAA-----CCGG-CGGACCG- -5'
26916 3' -59.2 NC_005809.1 + 27435 0.66 0.365337
Target:  5'- cGCgcccgGCGGCCGCa-GGCCcugGCgCUGGUa -3'
miRNA:   3'- uCGaa---CGUCGGUGaaCCGG---CG-GACCG- -5'
26916 3' -59.2 NC_005809.1 + 1962 0.66 0.362726
Target:  5'- gAGCgcGCGGCCcugggggaaggcacGCUguaGGCCGCgaGGUc -3'
miRNA:   3'- -UCGaaCGUCGG--------------UGAa--CCGGCGgaCCG- -5'
26916 3' -59.2 NC_005809.1 + 10133 0.67 0.356683
Target:  5'- gGGCguagggGCAGUCGCUgccGUCGUCUuGGCa -3'
miRNA:   3'- -UCGaa----CGUCGGUGAac-CGGCGGA-CCG- -5'
26916 3' -59.2 NC_005809.1 + 18919 0.67 0.356683
Target:  5'- cGCcuggUGCAGUUGCUgcccGCCGCC-GGCu -3'
miRNA:   3'- uCGa---ACGUCGGUGAac--CGGCGGaCCG- -5'
26916 3' -59.2 NC_005809.1 + 41597 0.67 0.355826
Target:  5'- cGGCcagGCGGCCAagUGGCUgcaagcuGCCgugGGCa -3'
miRNA:   3'- -UCGaa-CGUCGGUgaACCGG-------CGGa--CCG- -5'
26916 3' -59.2 NC_005809.1 + 32787 0.67 0.339811
Target:  5'- cGGCgUGC-GCgACcUGGCCGCgUGGa -3'
miRNA:   3'- -UCGaACGuCGgUGaACCGGCGgACCg -5'
26916 3' -59.2 NC_005809.1 + 7710 0.67 0.339811
Target:  5'- cGGCUugccgaugaacUGCAGCgCACgcucGGCgGCC-GGCu -3'
miRNA:   3'- -UCGA-----------ACGUCG-GUGaa--CCGgCGGaCCG- -5'
26916 3' -59.2 NC_005809.1 + 16367 0.67 0.339811
Target:  5'- uGUUcUGCGGCUugUUGGUagUGCC-GGCa -3'
miRNA:   3'- uCGA-ACGUCGGugAACCG--GCGGaCCG- -5'
26916 3' -59.2 NC_005809.1 + 1754 0.67 0.331594
Target:  5'- ----gGCGGUCAUggccGGCCugcGCCUGGCg -3'
miRNA:   3'- ucgaaCGUCGGUGaa--CCGG---CGGACCG- -5'
26916 3' -59.2 NC_005809.1 + 5688 0.67 0.323525
Target:  5'- uGCUUGcCGGCCuugucCUUGGCCuuGUCggucGGCa -3'
miRNA:   3'- uCGAAC-GUCGGu----GAACCGG--CGGa---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.