miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26939 3' -59.1 NC_005809.1 + 9874 0.7 0.265501
Target:  5'- aCCGGCGCGcugcuucucGGCCAGG-CGCgUg-GCGa -3'
miRNA:   3'- -GGCCGCGC---------UUGGUCCuGCGgAagCGC- -5'
26939 3' -59.1 NC_005809.1 + 34644 0.7 0.279048
Target:  5'- gUGGCGUGAAgguGGACGCCgagCGCa -3'
miRNA:   3'- gGCCGCGCUUgguCCUGCGGaa-GCGc -5'
26939 3' -59.1 NC_005809.1 + 25486 0.7 0.285321
Target:  5'- cCCGGC-CGAgaaccgcGCCGGcuuCGCCUUCGUGc -3'
miRNA:   3'- -GGCCGcGCU-------UGGUCcu-GCGGAAGCGC- -5'
26939 3' -59.1 NC_005809.1 + 24648 0.69 0.30039
Target:  5'- gCCGGCG--GGCCAGGAUGgUguugUCGCGc -3'
miRNA:   3'- -GGCCGCgcUUGGUCCUGCgGa---AGCGC- -5'
26939 3' -59.1 NC_005809.1 + 25322 0.69 0.30039
Target:  5'- aCCGGCGCucgucGCCGGGAUuguccaggccgGCCagUUCGCa -3'
miRNA:   3'- -GGCCGCGcu---UGGUCCUG-----------CGG--AAGCGc -5'
26939 3' -59.1 NC_005809.1 + 20317 0.69 0.307779
Target:  5'- gCCGGuUGCGAugCGGGcugGCCUUCaGUGg -3'
miRNA:   3'- -GGCC-GCGCUugGUCCug-CGGAAG-CGC- -5'
26939 3' -59.1 NC_005809.1 + 14867 0.69 0.307779
Target:  5'- aCCGGCgGCGAGCCGc--UGCCggCGCGc -3'
miRNA:   3'- -GGCCG-CGCUUGGUccuGCGGaaGCGC- -5'
26939 3' -59.1 NC_005809.1 + 15116 0.69 0.312279
Target:  5'- gCGGCGCGcuggcauaccagcGCCAGGGCcugcggccGCCgggCGCGg -3'
miRNA:   3'- gGCCGCGCu------------UGGUCCUG--------CGGaa-GCGC- -5'
26939 3' -59.1 NC_005809.1 + 23423 0.69 0.322972
Target:  5'- gCCGGUcaguGCGAcgccgGCCGGGAUGCggauggUUCGCGc -3'
miRNA:   3'- -GGCCG----CGCU-----UGGUCCUGCGg-----AAGCGC- -5'
26939 3' -59.1 NC_005809.1 + 42294 0.69 0.322972
Target:  5'- uCCGGCGC-AGCUAcuGGACGCCgugccucaagCGCc -3'
miRNA:   3'- -GGCCGCGcUUGGU--CCUGCGGaa--------GCGc -5'
26939 3' -59.1 NC_005809.1 + 28721 0.69 0.330775
Target:  5'- gUCGGCGCacGCgAGGaugaGCGCCUUgGCa -3'
miRNA:   3'- -GGCCGCGcuUGgUCC----UGCGGAAgCGc -5'
26939 3' -59.1 NC_005809.1 + 9733 0.69 0.330775
Target:  5'- gCCGcGgGCGAACUgcucgugguGGGCGCgCUUCGCc -3'
miRNA:   3'- -GGC-CgCGCUUGGu--------CCUGCG-GAAGCGc -5'
26939 3' -59.1 NC_005809.1 + 4671 0.69 0.330775
Target:  5'- uUGGCGgGcACCAGcGCGCCggauagCGCGg -3'
miRNA:   3'- gGCCGCgCuUGGUCcUGCGGaa----GCGC- -5'
26939 3' -59.1 NC_005809.1 + 14739 0.69 0.338717
Target:  5'- gCGGCGCG-GCC-GG-CGCCacCGCGg -3'
miRNA:   3'- gGCCGCGCuUGGuCCuGCGGaaGCGC- -5'
26939 3' -59.1 NC_005809.1 + 3852 0.69 0.338717
Target:  5'- cUCGGCGaaguuguACCAGG-CGCCgUCGCu -3'
miRNA:   3'- -GGCCGCgcu----UGGUCCuGCGGaAGCGc -5'
26939 3' -59.1 NC_005809.1 + 37420 0.68 0.346796
Target:  5'- -gGGCGUGAGCagcgacGGcCGCCUgCGCGg -3'
miRNA:   3'- ggCCGCGCUUGgu----CCuGCGGAaGCGC- -5'
26939 3' -59.1 NC_005809.1 + 38189 0.68 0.346796
Target:  5'- cCCGGCGCGAc----GGCGCCUggcugCGCa -3'
miRNA:   3'- -GGCCGCGCUuggucCUGCGGAa----GCGc -5'
26939 3' -59.1 NC_005809.1 + 16537 0.68 0.371852
Target:  5'- cCCGccGCGCGGGCUuuGAUGCCaUCGCc -3'
miRNA:   3'- -GGC--CGCGCUUGGucCUGCGGaAGCGc -5'
26939 3' -59.1 NC_005809.1 + 13227 0.68 0.377873
Target:  5'- aCCGGCGCGugguucgaggacuuGGCCGGcGAcCGCCacCGCc -3'
miRNA:   3'- -GGCCGCGC--------------UUGGUC-CU-GCGGaaGCGc -5'
26939 3' -59.1 NC_005809.1 + 7936 0.68 0.380474
Target:  5'- aCCGGCGCGAggauuuccgacaGCUugcccGugGCCUcggCGCGc -3'
miRNA:   3'- -GGCCGCGCU------------UGGuc---CugCGGAa--GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.