miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26939 3' -59.1 NC_005809.1 + 38852 0.77 0.093767
Target:  5'- aCCGGCGUGAACgGcacGGGCGCCacgagCGCGu -3'
miRNA:   3'- -GGCCGCGCUUGgU---CCUGCGGaa---GCGC- -5'
26939 3' -59.1 NC_005809.1 + 13227 0.68 0.377873
Target:  5'- aCCGGCGCGugguucgaggacuuGGCCGGcGAcCGCCacCGCc -3'
miRNA:   3'- -GGCCGCGC--------------UUGGUC-CU-GCGGaaGCGc -5'
26939 3' -59.1 NC_005809.1 + 39109 0.68 0.389228
Target:  5'- uCCaGCGCGAACauCGGGGCGCgCggCGUc -3'
miRNA:   3'- -GGcCGCGCUUG--GUCCUGCG-GaaGCGc -5'
26939 3' -59.1 NC_005809.1 + 34789 0.66 0.493613
Target:  5'- -gGGCgGCGAAggguGGACGCCggCGCa -3'
miRNA:   3'- ggCCG-CGCUUggu-CCUGCGGaaGCGc -5'
26939 3' -59.1 NC_005809.1 + 25197 0.73 0.166507
Target:  5'- gUCGGCGCGAugCAGGcAUaCCUgUCGCa -3'
miRNA:   3'- -GGCCGCGCUugGUCC-UGcGGA-AGCGc -5'
26939 3' -59.1 NC_005809.1 + 26278 0.72 0.199823
Target:  5'- cCCGuGCGCGAcgacgaccggguaGCCuuccGGGugGCCgcgCGCGa -3'
miRNA:   3'- -GGC-CGCGCU-------------UGG----UCCugCGGaa-GCGC- -5'
26939 3' -59.1 NC_005809.1 + 8447 0.71 0.222262
Target:  5'- aUCGGCGCGAugUcggcgucgAGGugGCCUgcgaugcCGCa -3'
miRNA:   3'- -GGCCGCGCUugG--------UCCugCGGAa------GCGc -5'
26939 3' -59.1 NC_005809.1 + 1884 0.71 0.240012
Target:  5'- gCCGGCGCuGGCCGGGugGgCgaacagcaGCGg -3'
miRNA:   3'- -GGCCGCGcUUGGUCCugCgGaag-----CGC- -5'
26939 3' -59.1 NC_005809.1 + 10465 0.71 0.252492
Target:  5'- gUCGGCaGCG-GCCAGGGCGUUgagcaaCGCGg -3'
miRNA:   3'- -GGCCG-CGCuUGGUCCUGCGGaa----GCGC- -5'
26939 3' -59.1 NC_005809.1 + 16537 0.68 0.371852
Target:  5'- cCCGccGCGCGGGCUuuGAUGCCaUCGCc -3'
miRNA:   3'- -GGC--CGCGCUUGGucCUGCGGaAGCGc -5'
26939 3' -59.1 NC_005809.1 + 14867 0.69 0.307779
Target:  5'- aCCGGCgGCGAGCCGc--UGCCggCGCGc -3'
miRNA:   3'- -GGCCG-CGCUUGGUccuGCGGaaGCGC- -5'
26939 3' -59.1 NC_005809.1 + 35031 0.71 0.248693
Target:  5'- cCCGGcCGCGAGCCagcGugcggaagaacacucGGACGCCgaaagCGCGc -3'
miRNA:   3'- -GGCC-GCGCUUGG---U---------------CCUGCGGaa---GCGC- -5'
26939 3' -59.1 NC_005809.1 + 41506 0.75 0.134186
Target:  5'- aCCGcGCGCGuuaCuGGACGCCgguUCGCGg -3'
miRNA:   3'- -GGC-CGCGCuugGuCCUGCGGa--AGCGC- -5'
26939 3' -59.1 NC_005809.1 + 15116 0.69 0.312279
Target:  5'- gCGGCGCGcuggcauaccagcGCCAGGGCcugcggccGCCgggCGCGg -3'
miRNA:   3'- gGCCGCGCu------------UGGUCCUG--------CGGaa-GCGC- -5'
26939 3' -59.1 NC_005809.1 + 7756 0.74 0.137886
Target:  5'- uUGGCGaCGAAggaauCCAGGcucGCGCCUUCGCc -3'
miRNA:   3'- gGCCGC-GCUU-----GGUCC---UGCGGAAGCGc -5'
26939 3' -59.1 NC_005809.1 + 35393 0.71 0.240012
Target:  5'- cCCGGCuGCG--UCAGGGCGUCagCGCGu -3'
miRNA:   3'- -GGCCG-CGCuuGGUCCUGCGGaaGCGC- -5'
26939 3' -59.1 NC_005809.1 + 14739 0.69 0.338717
Target:  5'- gCGGCGCG-GCC-GG-CGCCacCGCGg -3'
miRNA:   3'- gGCCGCGCuUGGuCCuGCGGaaGCGC- -5'
26939 3' -59.1 NC_005809.1 + 5442 0.68 0.38396
Target:  5'- gCGGCGUGGGCgAGGucgguaucgaccaucACGCCgcggUCGUu -3'
miRNA:   3'- gGCCGCGCUUGgUCC---------------UGCGGa---AGCGc -5'
26939 3' -59.1 NC_005809.1 + 4377 0.74 0.141679
Target:  5'- gCGGaUGCGcAGCCAGG-CGCCgUCGCGc -3'
miRNA:   3'- gGCC-GCGC-UUGGUCCuGCGGaAGCGC- -5'
26939 3' -59.1 NC_005809.1 + 31025 0.72 0.205642
Target:  5'- aCCGGCGgGcaguccuAUCAGGAUGCCcgcUCGCa -3'
miRNA:   3'- -GGCCGCgCu------UGGUCCUGCGGa--AGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.