miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26969 3' -63 NC_005809.1 + 34056 1.05 0.00023
Target:  5'- aUCGCCUACGCCACGGCCCACCCGCAUc -3'
miRNA:   3'- -AGCGGAUGCGGUGCCGGGUGGGCGUA- -5'
26969 3' -63 NC_005809.1 + 30088 0.76 0.043336
Target:  5'- gCGCCcggGCGCCACGGCCCuuguCCCagGCGa -3'
miRNA:   3'- aGCGGa--UGCGGUGCCGGGu---GGG--CGUa -5'
26969 3' -63 NC_005809.1 + 41955 0.75 0.060978
Target:  5'- aCGCCguguccacgGCGCUGCuGGCCgACCCGCAg -3'
miRNA:   3'- aGCGGa--------UGCGGUG-CCGGgUGGGCGUa -5'
26969 3' -63 NC_005809.1 + 24901 0.75 0.060978
Target:  5'- uUCGCCUACGCC-CaGCCCGCCgaCGCc- -3'
miRNA:   3'- -AGCGGAUGCGGuGcCGGGUGG--GCGua -5'
26969 3' -63 NC_005809.1 + 30128 0.73 0.085475
Target:  5'- gCGCCagaacACGCCGcCGGCCUGCaCCGCGUc -3'
miRNA:   3'- aGCGGa----UGCGGU-GCCGGGUG-GGCGUA- -5'
26969 3' -63 NC_005809.1 + 2351 0.72 0.090129
Target:  5'- gCGCgUGCGCCGCaauucGGCCUgcacguggcagacGCCCGCGUg -3'
miRNA:   3'- aGCGgAUGCGGUG-----CCGGG-------------UGGGCGUA- -5'
26969 3' -63 NC_005809.1 + 31589 0.71 0.10675
Target:  5'- cUCGCCUGgGCCugcuucUGGCCCuACCUGCu- -3'
miRNA:   3'- -AGCGGAUgCGGu-----GCCGGG-UGGGCGua -5'
26969 3' -63 NC_005809.1 + 16515 0.71 0.10675
Target:  5'- uUCGCCgaGCGCauggaGCGcGCCCGCCgCGCGg -3'
miRNA:   3'- -AGCGGa-UGCGg----UGC-CGGGUGG-GCGUa -5'
26969 3' -63 NC_005809.1 + 7065 0.71 0.118518
Target:  5'- -gGCCagguacuucaugACGCCGCGGCCUACCCacgGCGc -3'
miRNA:   3'- agCGGa-----------UGCGGUGCCGGGUGGG---CGUa -5'
26969 3' -63 NC_005809.1 + 37438 0.7 0.127254
Target:  5'- cCGCCUGCGCgGCacguugcaguucaacGGCgCCAgCCGCAc -3'
miRNA:   3'- aGCGGAUGCGgUG---------------CCG-GGUgGGCGUa -5'
26969 3' -63 NC_005809.1 + 19048 0.7 0.144184
Target:  5'- cCGCgUGCGCCGCcuggaaGGCgCGCUCGCGg -3'
miRNA:   3'- aGCGgAUGCGGUG------CCGgGUGGGCGUa -5'
26969 3' -63 NC_005809.1 + 29260 0.7 0.148127
Target:  5'- -aGCCUACGCCGCcuacaacgccGGCCCcggcGCgCUGCAa -3'
miRNA:   3'- agCGGAUGCGGUG----------CCGGG----UG-GGCGUa -5'
26969 3' -63 NC_005809.1 + 38052 0.69 0.15589
Target:  5'- cCGCCcagcACGCCACguucacgGGCgCCGCCCGUg- -3'
miRNA:   3'- aGCGGa---UGCGGUG-------CCG-GGUGGGCGua -5'
26969 3' -63 NC_005809.1 + 28191 0.69 0.160552
Target:  5'- aCGCCUACGuuCCGCGGCgCGgaugccCCCGCc- -3'
miRNA:   3'- aGCGGAUGC--GGUGCCGgGU------GGGCGua -5'
26969 3' -63 NC_005809.1 + 28845 0.69 0.17116
Target:  5'- cCGaCCUAUGCCuCGGCCUACCUcaacaaguauuccggGCAg -3'
miRNA:   3'- aGC-GGAUGCGGuGCCGGGUGGG---------------CGUa -5'
26969 3' -63 NC_005809.1 + 14484 0.69 0.172988
Target:  5'- cCGCgacggaauacgACGCCGCGGCCaccuGCCCGCu- -3'
miRNA:   3'- aGCGga---------UGCGGUGCCGGg---UGGGCGua -5'
26969 3' -63 NC_005809.1 + 23878 0.68 0.178577
Target:  5'- cUCGCCccggaaUACGCCAaggaagUGcGCCaCGCCCGCGg -3'
miRNA:   3'- -AGCGG------AUGCGGU------GC-CGG-GUGGGCGUa -5'
26969 3' -63 NC_005809.1 + 24175 0.68 0.183356
Target:  5'- uUCGCCgacguggcCGCCAcCGGCgCCAUCgGCAa -3'
miRNA:   3'- -AGCGGau------GCGGU-GCCG-GGUGGgCGUa -5'
26969 3' -63 NC_005809.1 + 35953 0.68 0.188247
Target:  5'- gCGCgCaGCGCCACGcGCCCGCUgGuCAUc -3'
miRNA:   3'- aGCG-GaUGCGGUGC-CGGGUGGgC-GUA- -5'
26969 3' -63 NC_005809.1 + 11515 0.68 0.198376
Target:  5'- gCGCCUGCGCUggcgugaGGCCCugCgaGCGg -3'
miRNA:   3'- aGCGGAUGCGGug-----CCGGGugGg-CGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.