miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26969 3' -63 NC_005809.1 + 681 0.67 0.237626
Target:  5'- cCGCCUACGgCGgcgcCGGCCgGgCCGCc- -3'
miRNA:   3'- aGCGGAUGCgGU----GCCGGgUgGGCGua -5'
26969 3' -63 NC_005809.1 + 2351 0.72 0.090129
Target:  5'- gCGCgUGCGCCGCaauucGGCCUgcacguggcagacGCCCGCGUg -3'
miRNA:   3'- aGCGgAUGCGGUG-----CCGGG-------------UGGGCGUA- -5'
26969 3' -63 NC_005809.1 + 5351 0.67 0.214457
Target:  5'- aUCGCgCUGCGUgGCcGCCUGCaCCGCGc -3'
miRNA:   3'- -AGCG-GAUGCGgUGcCGGGUG-GGCGUa -5'
26969 3' -63 NC_005809.1 + 7065 0.71 0.118518
Target:  5'- -gGCCagguacuucaugACGCCGCGGCCUACCCacgGCGc -3'
miRNA:   3'- agCGGa-----------UGCGGUGCCGGGUGGG---CGUa -5'
26969 3' -63 NC_005809.1 + 10009 0.66 0.283172
Target:  5'- gUGCCgcGCGCC-CGGCCCccGCCCugGUAg -3'
miRNA:   3'- aGCGGa-UGCGGuGCCGGG--UGGG--CGUa -5'
26969 3' -63 NC_005809.1 + 11515 0.68 0.198376
Target:  5'- gCGCCUGCGCUggcgugaGGCCCugCgaGCGg -3'
miRNA:   3'- aGCGGAUGCGGug-----CCGGGugGg-CGUa -5'
26969 3' -63 NC_005809.1 + 11840 0.66 0.276265
Target:  5'- -gGCC-GCGCCGCGGUUgGCCUGgGc -3'
miRNA:   3'- agCGGaUGCGGUGCCGGgUGGGCgUa -5'
26969 3' -63 NC_005809.1 + 11909 0.66 0.283172
Target:  5'- cCGCCUACaCCcaGCGGCCCGacgaauuggUCUGCGc -3'
miRNA:   3'- aGCGGAUGcGG--UGCCGGGU---------GGGCGUa -5'
26969 3' -63 NC_005809.1 + 12903 0.66 0.283172
Target:  5'- gUCGCCUuuggcgauGCGCU-CGGCCgCGCCCa--- -3'
miRNA:   3'- -AGCGGA--------UGCGGuGCCGG-GUGGGcgua -5'
26969 3' -63 NC_005809.1 + 12995 0.66 0.243737
Target:  5'- gCGCCUGgG-CGCGGCCgACCUGaCGc -3'
miRNA:   3'- aGCGGAUgCgGUGCCGGgUGGGC-GUa -5'
26969 3' -63 NC_005809.1 + 14420 0.66 0.276265
Target:  5'- gUCGCCaggcGCGCCuGCGGCaCCguguugggcgaaACCUGCGg -3'
miRNA:   3'- -AGCGGa---UGCGG-UGCCG-GG------------UGGGCGUa -5'
26969 3' -63 NC_005809.1 + 14484 0.69 0.172988
Target:  5'- cCGCgacggaauacgACGCCGCGGCCaccuGCCCGCu- -3'
miRNA:   3'- aGCGga---------UGCGGUGCCGGg---UGGGCGua -5'
26969 3' -63 NC_005809.1 + 14582 0.66 0.276265
Target:  5'- -gGCUgAUGCCgGCGGCCgAUCCGCu- -3'
miRNA:   3'- agCGGaUGCGG-UGCCGGgUGGGCGua -5'
26969 3' -63 NC_005809.1 + 14832 0.66 0.276265
Target:  5'- uUCGCCcaggucgAUGCCguugGCGGCCaGCgCCGCAc -3'
miRNA:   3'- -AGCGGa------UGCGG----UGCCGGgUG-GGCGUa -5'
26969 3' -63 NC_005809.1 + 14978 0.66 0.25635
Target:  5'- aCGaCC-ACGCCAucUGGCgCCGCCUGCu- -3'
miRNA:   3'- aGC-GGaUGCGGU--GCCG-GGUGGGCGua -5'
26969 3' -63 NC_005809.1 + 16269 0.67 0.237626
Target:  5'- -gGCCU-CGCgCGCGGCC-ACCCGgAa -3'
miRNA:   3'- agCGGAuGCG-GUGCCGGgUGGGCgUa -5'
26969 3' -63 NC_005809.1 + 16515 0.71 0.10675
Target:  5'- uUCGCCgaGCGCauggaGCGcGCCCGCCgCGCGg -3'
miRNA:   3'- -AGCGGa-UGCGg----UGC-CGGGUGG-GCGUa -5'
26969 3' -63 NC_005809.1 + 16980 0.66 0.276265
Target:  5'- gUUGCCacUGCCugGGCCgCAgaCCGCGg -3'
miRNA:   3'- -AGCGGauGCGGugCCGG-GUg-GGCGUa -5'
26969 3' -63 NC_005809.1 + 18559 0.66 0.276265
Target:  5'- uUCGCUgaaUugGCCgACGcGCCCACCuuCGCc- -3'
miRNA:   3'- -AGCGG---AugCGG-UGC-CGGGUGG--GCGua -5'
26969 3' -63 NC_005809.1 + 19048 0.7 0.144184
Target:  5'- cCGCgUGCGCCGCcuggaaGGCgCGCUCGCGg -3'
miRNA:   3'- aGCGgAUGCGGUG------CCGgGUGGGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.