miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26969 3' -63 NC_005809.1 + 14582 0.66 0.276265
Target:  5'- -gGCUgAUGCCgGCGGCCgAUCCGCu- -3'
miRNA:   3'- agCGGaUGCGG-UGCCGGgUGGGCGua -5'
26969 3' -63 NC_005809.1 + 20004 0.67 0.22579
Target:  5'- cUCGCCaacuugcuCGgCAUGGCgCGCCUGCAUc -3'
miRNA:   3'- -AGCGGau------GCgGUGCCGgGUGGGCGUA- -5'
26969 3' -63 NC_005809.1 + 41726 0.67 0.231644
Target:  5'- -aGCCaUACagGCCACGGUCgGCUCGCu- -3'
miRNA:   3'- agCGG-AUG--CGGUGCCGGgUGGGCGua -5'
26969 3' -63 NC_005809.1 + 681 0.67 0.237626
Target:  5'- cCGCCUACGgCGgcgcCGGCCgGgCCGCc- -3'
miRNA:   3'- aGCGGAUGCgGU----GCCGGgUgGGCGua -5'
26969 3' -63 NC_005809.1 + 16269 0.67 0.237626
Target:  5'- -gGCCU-CGCgCGCGGCC-ACCCGgAa -3'
miRNA:   3'- agCGGAuGCG-GUGCCGGgUGGGCgUa -5'
26969 3' -63 NC_005809.1 + 32366 0.66 0.249978
Target:  5'- gUCGCCgccgAgGCCcCGGCC-GCCCaGCAg -3'
miRNA:   3'- -AGCGGa---UgCGGuGCCGGgUGGG-CGUa -5'
26969 3' -63 NC_005809.1 + 23759 0.66 0.25635
Target:  5'- aUGCCgGCGCCACcgGGCCgAUgcgCCGCGg -3'
miRNA:   3'- aGCGGaUGCGGUG--CCGGgUG---GGCGUa -5'
26969 3' -63 NC_005809.1 + 33973 0.66 0.269492
Target:  5'- aCGCCUACGCCAUc-CCCACggUCGCc- -3'
miRNA:   3'- aGCGGAUGCGGUGccGGGUG--GGCGua -5'
26969 3' -63 NC_005809.1 + 11840 0.66 0.276265
Target:  5'- -gGCC-GCGCCGCGGUUgGCCUGgGc -3'
miRNA:   3'- agCGGaUGCGGUGCCGGgUGGGCgUa -5'
26969 3' -63 NC_005809.1 + 40707 0.67 0.22579
Target:  5'- gCGCCg--GCCACGGgCUgaACCUGCAa -3'
miRNA:   3'- aGCGGaugCGGUGCCgGG--UGGGCGUa -5'
26969 3' -63 NC_005809.1 + 20188 0.67 0.208435
Target:  5'- uUCGCCUugucguCGCCcuCGGUCUuggcagcGCCCGCGg -3'
miRNA:   3'- -AGCGGAu-----GCGGu-GCCGGG-------UGGGCGUa -5'
26969 3' -63 NC_005809.1 + 11515 0.68 0.198376
Target:  5'- gCGCCUGCGCUggcgugaGGCCCugCgaGCGg -3'
miRNA:   3'- aGCGGAUGCGGug-----CCGGGugGg-CGUa -5'
26969 3' -63 NC_005809.1 + 30088 0.76 0.043336
Target:  5'- gCGCCcggGCGCCACGGCCCuuguCCCagGCGa -3'
miRNA:   3'- aGCGGa--UGCGGUGCCGGGu---GGG--CGUa -5'
26969 3' -63 NC_005809.1 + 30128 0.73 0.085475
Target:  5'- gCGCCagaacACGCCGcCGGCCUGCaCCGCGUc -3'
miRNA:   3'- aGCGGa----UGCGGU-GCCGGGUG-GGCGUA- -5'
26969 3' -63 NC_005809.1 + 2351 0.72 0.090129
Target:  5'- gCGCgUGCGCCGCaauucGGCCUgcacguggcagacGCCCGCGUg -3'
miRNA:   3'- aGCGgAUGCGGUG-----CCGGG-------------UGGGCGUA- -5'
26969 3' -63 NC_005809.1 + 31589 0.71 0.10675
Target:  5'- cUCGCCUGgGCCugcuucUGGCCCuACCUGCu- -3'
miRNA:   3'- -AGCGGAUgCGGu-----GCCGGG-UGGGCGua -5'
26969 3' -63 NC_005809.1 + 7065 0.71 0.118518
Target:  5'- -gGCCagguacuucaugACGCCGCGGCCUACCCacgGCGc -3'
miRNA:   3'- agCGGa-----------UGCGGUGCCGGGUGGG---CGUa -5'
26969 3' -63 NC_005809.1 + 37438 0.7 0.127254
Target:  5'- cCGCCUGCGCgGCacguugcaguucaacGGCgCCAgCCGCAc -3'
miRNA:   3'- aGCGGAUGCGgUG---------------CCG-GGUgGGCGUa -5'
26969 3' -63 NC_005809.1 + 23878 0.68 0.178577
Target:  5'- cUCGCCccggaaUACGCCAaggaagUGcGCCaCGCCCGCGg -3'
miRNA:   3'- -AGCGG------AUGCGGU------GC-CGG-GUGGGCGUa -5'
26969 3' -63 NC_005809.1 + 35953 0.68 0.188247
Target:  5'- gCGCgCaGCGCCACGcGCCCGCUgGuCAUc -3'
miRNA:   3'- aGCG-GaUGCGGUGC-CGGGUGGgC-GUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.